PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02003.1.g00210.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 181aa    MW: 19762.5 Da    PI: 10.8987
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02003.1.g00210.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-091458344
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                   WT+   +l+ +a + + ++   +W+ Iar +g g+++++c+ ++
  Zmw_sc02003.1.g00210.1.am.mk 14 QWTPRQNKLFEQALAVYEKDtpdRWSNIARAVGGGKSAEDCRRYY 58
                                  7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-5867IPR009057Homeodomain-like
PROSITE profilePS5129310.8381066IPR017884SANT domain
SMARTSM007172.7E-81164IPR001005SANT/Myb domain
PfamPF002491.2E-71358IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-111470IPR009057Homeodomain-like
CDDcd001674.08E-71561No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MASLSMTKNS ARAQWTPRQN KLFEQALAVY EKDTPDRWSN IARAVGGGKS AEDCRRYYEL  60
LEEDVKHIES GKVPFPAIIW AACEPKAAQT HSPTTLAINA AKFRVPRRPL AVFPRGLRPP  120
THRRRTLPPL SVTALAASAS AFALRTGTSS DAAANNPEPS KHLAEPNQHL AGGPPLPRPT  180
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-24476171RADIALIS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230