PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02011.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 282aa    MW: 30577.8 Da    PI: 10.2919
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02011.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.89.3e-1253104147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 
                                     +++WT+eE++ l ++v ++G g W+tI +          R+  ++k++w+++
  Zmw_sc02011.1.g00030.1.am.mkhc  53 KQKWTQEEEDALRRGVLKHGAGKWRTIQKDPEfsptlSSRSNIDLKDKWRNL 104
                                     79***********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.90548108IPR017930Myb domain
SuperFamilySSF466892.23E-1550106IPR009057Homeodomain-like
SMARTSM007174.6E-852107IPR001005SANT/Myb domain
PfamPF002491.5E-853104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-1453104IPR009057Homeodomain-like
CDDcd116609.40E-2054104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
ARERSRPPPG KDAHMNTRRV GEDRPLLVYV EGGWTLEKPQ IAGGEARAMG APKQKWTQEE  60
EDALRRGVLK HGAGKWRTIQ KDPEFSPTLS SRSNIDLKDK WRNLSFSAGQ GSREKTRVPK  120
ITGPSSSALP APQALLLRAS NKIAEASAPA DAEKKSQDGK ASPKFVDNKF YKVTDSFATK  180
TPALVKASTK KQKDPSKPLK ASKNLGIFAA VSPALEAAAA AAAKVADAEA KAHLAHEHMM  240
EADRILKMAE ETESLLTLAA EIYDRCSSGE IITVNPVSQK EF
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105225.12e-94single myb histone 3
RefseqXP_025815372.18e-91glycylpeptide N-tetradecanoyltransferase 1
SwissprotQ6WLH41e-95SMH3_MAIZE; Single myb histone 3
TrEMBLA0A0A9PJS41e-104A0A0A9PJS4_ARUDO; Smh4
STRINGPavir.Ea02570.1.p3e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]