PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02013.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 261aa    MW: 28359.6 Da    PI: 7.2891
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02013.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.3e-18647245
                                  SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                                  ++WT++Ed  l++a+k +G++ W++Ia++++ gR+++ +k++w+
  Zmw_sc02013.1.g00060.1.sm.mk  6 DAWTEDEDRMLINAHKFYGNR-WSSIAKYLP-GRSENAIKNHWN 47
                                  58*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.343154IPR017930Myb domain
SuperFamilySSF466896.1E-16254IPR009057Homeodomain-like
SMARTSM007173.4E-16452IPR001005SANT/Myb domain
CDDcd001671.24E-15750No hitNo description
PfamPF002493.5E-16747IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-19751IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDRQNDAWTE DEDRMLINAH KFYGNRWSSI AKYLPGRSEN AIKNHWNATL RSLKAQRRMK  60
KRKSEQVPTG QFSALEEYIR SQWPKDAVPA APPPLPLSAP QPHLAYGSGL LHPAAHAPAA  120
GSATIPTNRE MSFHGDNLAA GSANLAGMIN LNMPQTLPDL NTISGRQEYY LNYATMYAPA  180
PAPQMHLTPT QDPMQVVSNL DLSPYAEYFA LLCPDYGRYN YASASSSNPA GANGYYNEAG  240
RGAAGAGGGD PAARHTDGVV E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A3e-18151151MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A3e-18151151MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15562QRRMKKRK
25662RRMKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972257.13e-55transcription factor MYB80
TrEMBLK3XS587e-54K3XS58_SETIT; Uncharacterized protein
STRINGSi004755m1e-54(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101