PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02013.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 168aa    MW: 17815.2 Da    PI: 4.3705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02013.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.7e-18118162348
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +WT+eEd +l + v q+G + W+ Ia++++ gR +kqc++rw +yl
  Zmw_sc02013.1.g00070.1.sm.mk 118 SWTEEEDSILREMVLQYGERKWSVIAQCIP-GRIGKQCRERWINYL 162
                                   7*****************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.003111166IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-22112167IPR009057Homeodomain-like
SMARTSM007171.6E-16115164IPR001005SANT/Myb domain
CDDcd001674.33E-17118162No hitNo description
PfamPF002491.1E-16118162IPR001005SANT/Myb domain
SuperFamilySSF466893.66E-18118167IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAGGSSVPID EVEAALMADW SPMVYFGSSY HGNDGFQNGM APASTLAGAD QIMGAPVDVS  60
SLVDSIGMTP AGLEMPEGAL AATDFGVVGG EFPAGGTMSS QQQIGSNKKP PASLKASSWT  120
EEEDSILREM VLQYGERKWS VIAQCIPGRI GKQCRERWIN YLRPNIKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gvd_A3e-15119164651MYB PROTO-ONCOGENE PROTEIN
1mbg_A3e-15119164651MYB PROTO-ONCOGENE PROTEIN
1mbh_A3e-15119164651C-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814296.13e-50transcription factor MYB77-like
TrEMBLA0A2S3HPX28e-49A0A2S3HPX2_9POAL; Uncharacterized protein
STRINGPavir.Ea03785.1.p9e-47(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101