PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02018.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 289aa MW: 31405.4 Da PI: 7.8168

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02018.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	9.5e-18	194	241	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed ll ++v+q+G g+W+++a+ g++R++k+c++rw +yl Zmw_sc02018.1.g00020.1.am.mk 194 KGPWTALEDRLLTEYVQQHGEGCWSSVAKLTGLRRSGKSCRLRWVNYL 241 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.211	189	245	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-22	191	244	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-15	193	243	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-16	194	241	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.12E-21	195	269	IPR009057	Homeodomain-like
CDD	cd00167	2.38E-12	196	241	No hit	No description
PROSITE profile	PS50090	4.786	242	273	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	6.0E-7	245	273	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MAHVRRLRQS AIDTGHVDDH VRGALPLQDG VATEGEKETL FRESMTLGAR RLLLSASSAC 60 STRQQSVSDN PISQKGCAWL AWQRPAAAGA GREAEAAMAG YWVAAGCAVA SAVHLELGIA 120 PASPPRTGVR SNSSSLVVER LSKLFPSPLR VCVLSEDVDL HAARPSEADE PEARVIDGFD 180 RERRSLMLQG GWRKGPWTAL EDRLLTEYVQ QHGEGCWSSV AKLTGLRRSG KSCRLRWVNY 240 LRPDLKRGKI TPDEETVIHQ LHAMLGNSLW RLVDGDNCSA GDGSSGGDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	9e-15	194	267	27	99	MYB TRANSFORMING PROTEIN

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13228	24	33