PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02023.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 181aa MW: 20049.5 Da PI: 6.9762

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02023.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.3	1.8e-50	43	168	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 +pGfrFhPt+eel+ +yL++kveg+++++ + i+++d+y+++Pw+Lp+++ + kew+f+++rd+ky++g+r+nr+t+sgy Zmw_sc02023.1.g00010.1.am.mk 43 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-DLIADLDLYRFDPWELPAMAVMGGKEWFFYVPRDRKYRNGDRPNRVTASGY 122 79*************************.99***********7767789*********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg d+ + ++++ +glkktLvfy+g+apkg++++W+m+eyrl Zmw_sc02023.1.g00010.1.am.mk 123 WKATGADRMIRGEDNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 168 ******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-55	42	173	IPR003441	NAC domain
PROSITE profile	PS51005	51.645	42	181	IPR003441	NAC domain
Pfam	PF02365	2.1E-25	44	168	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MSRDLEDGHG GAVAAGGGAG SSEASVGGGA GDGGDSHDND LVMPGFRFHP TEEELIEFYL 60 RRKVEGRRFN VDLIADLDLY RFDPWELPAM AVMGGKEWFF YVPRDRKYRN GDRPNRVTAS 120 GYWKATGADR MIRGEDNRPI GLKKTLVFYS GKAPKGVRSS WIMNEYRLPP PAADADPLTH 180 K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	44	172	19	146	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	44	172	19	146	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	44	172	19	146	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	44	172	19	146	NO APICAL MERISTEM PROTEIN
4dul_A	1e-54	44	172	19	146	NAC domain-containing protein 19
4dul_B	1e-54	44	172	19	146	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004962060.1	1e-105	NAC domain-containing protein 35
Swissprot	Q9ZVP8	3e-82	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	K3Z6L9	1e-103	K3Z6L9_SETIT; Uncharacterized protein
STRING	Pavir.J00477.1.p	1e-107	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2826	37	87

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]