PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02026.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 327aa MW: 35385.3 Da PI: 8.1204

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02026.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.3	2e-11	259	304	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+ l+P+ +k + a++L +Ave+I+ Lq Zmw_sc02026.1.g00140.1.am.mkhc 259 SIAERERRTRISEKLRKLQALVPNM----DKQTTTADMLDLAVEHIRGLQ 304 689*******************7....688**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.1	253	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-15	256	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.22E-12	257	308	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.4E-14	258	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.2E-9	259	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-12	259	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MDPPPDRGGE RSRYGYGGGS AAFPFVVDPT EGPGVRAFFP APEGSGEPPP PASTAERYGA 60 DISLGHGMHR YHQFSVEGNR ILDGGTSGSL PRHSSSPPGF FSSPVVDNSF SSARVGVGGG 120 SDVHQATSSY NKKMKSPMNL PRQGTLAQIS EDGVPNLTKK MHAIRHSEEN ITASNVARSF 180 SGGFSIGSWE DSNSIAFSNP SSKDGVNNND DFMATLSNYE LQFGVAKEAS GVDKYLQMQN 240 DQIPFRVRAK RGCATHPRSI AERERRTRIS EKLRKLQALV PNMDKQTTTA DMLDLAVEHI 300 RGLQSELQVL KEEMEKCSCR GKHPSGN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825346.1	1e-147	transcription factor bHLH129-like
TrEMBL	A0A2T7CWM6	1e-147	A0A2T7CWM6_9POAL; Uncharacterized protein
STRING	Si010513m	1e-145	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14188	20	26