PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02028.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 150aa MW: 16456 Da PI: 10.8754

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02028.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.9	2.2e-08	33	80	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +WT E +lvd+v+++G g W+ I + Rt ++k++w+++ Zmw_sc02028.1.g00010.1.am.mkhc 33 AWTLCEVMKLVDGVALYGAGKWSEIRKLAFssySYRTSVDLKDKWRNL 80 7*************************99999***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.635	26	85	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-12	28	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.28E-15	28	83	IPR009057	Homeodomain-like
SMART	SM00717	3.0E-7	30	83	IPR001005	SANT/Myb domain
CDD	cd11660	1.99E-17	32	82	No hit	No description
Pfam	PF00249	3.0E-6	33	80	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
VNAVKGGHAE AVENKGVRKP KKKQAFTRKH HRAWTLCEVM KLVDGVALYG AGKWSEIRKL 60 AFSSYSYRTS VDLKDKWRNL IRASKTQLHA IEDGGCPRKT NPSIIPIPPS ILLRVKELNE 120 LQSQGSGFAG PLQFSGSNGK VVQGKGSGFL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001169431.1	4e-65	uncharacterized LOC100383302
Refseq	XP_008644053.1	4e-65	uncharacterized protein LOC100383302 isoform X1
Refseq	XP_008644054.1	4e-65	uncharacterized protein LOC100383302 isoform X2
Refseq	XP_008644055.1	4e-65	uncharacterized protein LOC100383302 isoform X5
Refseq	XP_008644058.1	4e-65	uncharacterized protein LOC100383302 isoform X6
Refseq	XP_020409096.1	4e-65	uncharacterized protein LOC100383302 isoform X1
Refseq	XP_020409097.1	4e-65	uncharacterized protein LOC100383302 isoform X1
Refseq	XP_020409098.1	4e-65	uncharacterized protein LOC100383302 isoform X4
Refseq	XP_020409100.1	4e-65	uncharacterized protein LOC100383302 isoform X5
Refseq	XP_020409101.1	4e-65	uncharacterized protein LOC100383302 isoform X4
TrEMBL	A0A1D6HLX1	2e-67	A0A1D6HLX1_MAIZE; TRF-like 6
STRING	Pavir.J06110.1.p	2e-68	(Panicum virgatum)
STRING	GRMZM2G049194_P02	1e-64	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6966	33	41