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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc02041.1.g00040.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | bHLH | ||||||||
| Protein Properties | Length: 284aa MW: 29924.3 Da PI: 8.9111 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 37.4 | 4.4e-12 | 177 | 220 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h +ErrRR+riN++f eL +++P + Ka+iL A++Y+k+Lq
Zmw_sc02041.1.g00040.1.am.mk 177 HHILAERRRRERINQRFIELSTVIPGL--------KKATILSDATRYVKELQ 220
6999**********************8........6***************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 6.8E-15 | 166 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 10.017 | 173 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 8.5E-15 | 177 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.3E-9 | 177 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.5E-12 | 179 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 5.95E-4 | 186 | 224 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 284 aa Download sequence Send to blast |
MENSSLFMQW ALSILQHEHP PATPGGPGPA PRDGGDHSLS PLPELGLAVS GLSASMSSMV 60 PGEPPAREGS RATGSWSSGE TTHSGGAPVT ALERDGWSPS QNSAVHAAPR SSGANQPVSW 120 NFSAASARPS KEAMRNSTAT DGGGGGGAPL MVQESLPTRT TARRSGPTPS SAMYVQHHIL 180 AERRRRERIN QRFIELSTVI PGLKKATILS DATRYVKELQ GKIKEHEDSR SNGHRNVEYG 240 AVLAKNKKPR ITVPDDEDGA YVASVPAATS GALPEIAARI SEEM |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 181 | 186 | ERRRRE |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025792499.1 | 2e-67 | transcription factor bHLH18-like | ||||
| TrEMBL | A0A0A9SBV5 | 5e-71 | A0A0A9SBV5_ARUDO; Uncharacterized protein | ||||
| STRING | GRMZM2G095899_P01 | 5e-58 | (Zea mays) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP43409 | 2 | 3 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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