PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02066.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 371aa MW: 39910.2 Da PI: 9.0438

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02066.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.5	4.2e-12	140	186	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++i+++f eL ++P + +K++ a+iL +A+ Y+k+Lq Zmw_sc02066.1.g00090.1.am.mk 140 EHIMAERKRREKIRQRFVELSAVIPGL-----TKMDNATILYRATSYVKELQ 186 599*********************9.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.665	136	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-15	139	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	140	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.9E-16	140	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.90E-13	141	190	No hit	No description
SMART	SM00353	6.0E-13	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MEDMTEFLQW ATNALQQEHS APPVADCASP SVLLGVPEEQ RSIMGAPATN RWIPGGTTDG 60 SLVGHIAVPA APMVAPSTNM AGNAPTSSLV GGNTSASWSF GSATGRILSE LAYRSQPTRT 120 ACLTNPWSSA SFAPPPYARE HIMAERKRRE KIRQRFVELS AVIPGLTKMD NATILYRATS 180 YVKELQESIK RREAAGSALS GSMDTIVPTP RHATTAGPTK PLPDVQAHFS GKSVMVRILC 240 ENGKGVIVKV LKEVEEAHLS IVDANFMAKS AACLRWEAAT RRRAGVGCVG NEQELTVWAM 300 GESRPTRSGG ASDEREPSDE IRRHGRRDLR PSETAPADGP GAPTGNGYCR LATARGHRPL 360 SWFEGKNRMV D

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MEDMTEFLQW ATNALQQEHS APPVADCASP SVLLGVPEEQ RSIMGAPATN RWIPGGTTDG  60
SLVGHIAVPA APMVAPSTNM AGNAPTSSLV GGNTSASWSF GSATGRILSE LAYRSQPTRT  120
ACLTNPWSSA SFAPPPYARE HIMAERKRRE KIRQRFVELS AVIPGLTKMD NATILYRATS  180
YVKELQESIK RREAAGSALS GSMDTIVPTP RHATTAGPTK PLPDVQAHFS GKSVMVRILC  240
ENGKGVIVKV LKEVEEAHLS IVDANFMAKS AACLRWEAAT RRRAGVGCVG NEQELTVWAM  300
GESRPTRSGG ASDEREPSDE IRRHGRRDLR PSETAPADGP GAPTGNGYCR LATARGHRPL  360
SWFEGKNRMV D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	149	ERKRRE
2	145	150	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3B6JEJ4	4e-52	A0A3B6JEJ4_WHEAT; Uncharacterized protein
STRING	GRMZM2G120021_P01	2e-48	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP33283	3	4