PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02097.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 229aa    MW: 25149.2 Da    PI: 9.9949
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02097.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61.1e-1177127146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 
                                     ++rWT+eE+  l  +v+++G g+W+tI +          R+  ++k++w++
  Zmw_sc02097.1.g00080.1.sm.mkhc  77 KQRWTAEEEAALRAGVARHGVGNWRTILKDPEfsstlCYRSNVDLKDKWRN 127
                                     79****************************999999978**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.20372133IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-1374128IPR009057Homeodomain-like
SuperFamilySSF466893.09E-1674131IPR009057Homeodomain-like
SMARTSM007179.2E-876131IPR001005SANT/Myb domain
PfamPF002491.1E-877128IPR001005SANT/Myb domain
CDDcd116606.97E-2278129No hitNo description
Gene3DG3DSA:1.10.10.105.8E-7192226IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-5192225IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MRLFHSATLY VTNPTQSVSH DLLPRPTQRS TSIINPSGDT SCSWDGRIAT GPSLPMPDPP  60
LATRRCSFVG PTMGVPKQRW TAEEEAALRA GVARHGVGNW RTILKDPEFS STLCYRSNVD  120
LKDKWRNMNV VSTSSGSREK GRTGVKKTRP APKNNDQSMT VNTITSDADE EIADVKPIAS  180
LSGEAWNNSN PKKSNSRIDN VILEAIKNLK EPTGSHRTTI ANYIEMSQA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968284.12e-81single myb histone 5
RefseqXP_004968285.12e-81single myb histone 5
RefseqXP_022682871.12e-81single myb histone 5
SwissprotC0HIA32e-75SMH6_MAIZE; Single myb histone 6
TrEMBLA0A1E5VMK14e-82A0A1E5VMK1_9POAL; Single myb histone 6
STRINGPavir.J17249.1.p3e-81(Panicum virgatum)
STRINGSi002372m7e-81(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]