PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02100.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 175aa MW: 19721.9 Da PI: 10.002

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02100.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62.9	3.6e-20	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq+t+skRr gilKKA+ELS+LCd+ +++fs+tgk Zmw_sc02100.1.g00050.1.sm.mk 10 KLENNGGRQITYSKRRSGILKKAKELSILCDIHLILLLFSPTGK 53 6799999***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.5E-26	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.759	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-21	1	74	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-17	12	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MGRVKLKIKK LENNGGRQIT YSKRRSGILK KAKELSILCD IHLILLLFSP TGKPAICIAK 60 KDQVQSVAQS KNAYTTIEEV VAKYAQLTPQ ERAKRKLESL EALKKTFKKV DHDVKIHVLG 120 LWTPDEDALF QFQNDMQLPL GLTGDPDAAS WFHNGGADVQ QPLMLPDDHT LLHQR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258314.1	9e-54	PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_010258315.1	7e-54	PREDICTED: agamous-like MADS-box protein AGL65 isoform X2
Refseq	XP_010258316.1	1e-54	PREDICTED: agamous-like MADS-box protein AGL65 isoform X3
Swissprot	Q1PFA4	7e-44	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A0D9XUZ0	5e-69	A0A0D9XUZ0_9ORYZ; Uncharacterized protein
TrEMBL	K3ZP27	2e-68	K3ZP27_SETIT; Uncharacterized protein
STRING	Si028357m	3e-69	(Setaria italica)
STRING	LPERR11G18320.1	9e-70	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4626	36	59

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]