PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02128.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 241aa MW: 24598.9 Da PI: 10.3742

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02128.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.3	0.00016	190	209	12	31
HHHHHHHHHHHHHCTSCCC. CS HLH 12 RRdriNsafeeLrellPkas 31 RR++iN ++e L+el+P ++ Zmw_sc02128.1.g00150.1.am.mk 190 RREKINARMELLKELVPGCM 209 9****************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.8E-4	170	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MRHTSPPPPQ EFPVSGAEIQ ALIPASAAGP SSLSTTTASA GGGGGTRASF TALLGLPTSQ 60 AMELLLPRVA PAPAPAFPTD PHLVDRAAHF SAFASPAPSS PSPITTPPPP PPPPAPSATN 120 AKRKADPADR SSKGKAAKKG KTAVDENKPA GGDGEDEKPA YVHVRARRGQ ATDSHSLAER 180 VSSPPLLFAR REKINARMEL LKELVPGCMH LASPGEGMGF ASRLWLSGQN VAAALKVAGD 240 G

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001347160.1	3e-54	uncharacterized protein LOC100273300
Swissprot	Q8VZ02	2e-25	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A3L6PCD5	1e-54	A0A3L6PCD5_PANMI; Putative HLH DNA-binding domain superfamily protein
STRING	GRMZM2G378653_P02	2e-57	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP62070	2	2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]