PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02130.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 400aa MW: 42957.6 Da PI: 4.7691

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02130.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.1e-11	273	318	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +Ka+ L + ++Y+k Lq Zmw_sc02130.1.g00040.1.sm.mkhc 273 HSIAERLRREKISDRMKNLQDLVPNS-----NKADKASRLDEIIDYVKFLQ 318 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.28E-11	266	322	No hit	No description
SuperFamily	SSF47459	1.57E-15	266	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.456	268	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-15	272	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-8	273	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-11	274	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MDDPKVSVAY LGVFMENSSG SYLSSWPAPE SYSSAAGSVE SYAGEGNMPP SSYFMNAISD 60 HSLKFNDQEQ NSTLLSNGCL AYSAQADLLS GEILSKDKLT SNLMEVQQLQ SRSSQQSNLV 120 NQGVFQKNST PEIFYPQLDT PRFAELPQTL SSSIDSNGNG VSAFLTDIHA VSSASTFCST 180 YENCSSFMEP VNIEAYSFGA QNDVMLNKTD HPSGNTSAFG NSASATLIMP SGTNDNKSEG 240 PVSPPGVQPK ANGNGVGVKP RARARRGQAT DPHSIAERLR REKISDRMKN LQDLVPNSNK 300 ADKASRLDEI IDYVKFLQLQ VKGYCGQPLS APTTPHGQPD AQDSEDTLAF EQEVVKLMET 360 SITSAMQYLQ NKGLCLMPVA LASSISNQKG TAAAAVPTQR

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MDDPKVSVAY LGVFMENSSG SYLSSWPAPE SYSSAAGSVE SYAGEGNMPP SSYFMNAISD  60
HSLKFNDQEQ NSTLLSNGCL AYSAQADLLS GEILSKDKLT SNLMEVQQLQ SRSSQQSNLV  120
NQGVFQKNST PEIFYPQLDT PRFAELPQTL SSSIDSNGNG VSAFLTDIHA VSSASTFCST  180
YENCSSFMEP VNIEAYSFGA QNDVMLNKTD HPSGNTSAFG NSASATLIMP SGTNDNKSEG  240
PVSPPGVQPK ANGNGVGVKP RARARRGQAT DPHSIAERLR REKISDRMKN LQDLVPNSNK  300
ADKASRLDEI IDYVKFLQLQ VKGYCGQPLS APTTPHGQPD AQDSEDTLAF EQEVVKLMET  360
SITSAMQYLQ NKGLCLMPVA LASSISNQKG TAAAAVPTQR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008647333.1	1e-164	bHLH transcription factor isoform X2
TrEMBL	A0A0A8YDF6	1e-174	A0A0A8YDF6_ARUDO; Uncharacterized protein
STRING	Traes_7DS_68E3ACF8E.1	1e-148	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3254	38	79