PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02154.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 500aa    MW: 53839.4 Da    PI: 8.6481
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02154.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-07238259426
                                     ---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                     ++C++f++ G C+yG+rC++ H+
  Zmw_sc02154.1.g00050.1.am.mkhc 238 RPCKYFLA-GDCSYGERCRYPHS 259
                                     79******.***********887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.718157183IPR000571Zinc finger, CCCH-type
SMARTSM003560.1158182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.582234261IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4234260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5235259IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-5238259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4238260IPR000571Zinc finger, CCCH-type
SuperFamilySSF509789.52E-29265492IPR017986WD40-repeat-containing domain
SMARTSM003201.0E-5265304IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.3E-26267493IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004002.8E-5270304IPR001680WD40 repeat
PROSITE profilePS5029412.736272313IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.783272313IPR001680WD40 repeat
PROSITE patternPS006780291305IPR019775WD40 repeat, conserved site
SMARTSM00320440307342IPR001680WD40 repeat
SMARTSM0032016344381IPR001680WD40 repeat
SMARTSM0032037388452IPR001680WD40 repeat
SMARTSM0032016455492IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
VPGRACAATA GEDCCWPAPV HATTAARRLF GGRCKDCGMA RATEALMAPA EGAIGMGARA  60
PFWEEAMRQC NRYRAIAPFF TDPDLPHELR RALAASLPHD PTPHIYIYLY LSGFPPLRPP  120
NPDYLARPPM DIEADGRFGN KRVHHRLGPG SGGPPSSTNG KVCNYWRQGR CNRFPCPFLH  180
SELPEASAPT KRSTGPGRIV WRNPNVGGRG GGSGGGYNRW GKGPGGGGST ASHKPPDRPC  240
KYFLAGDCSY GERCRYPHSY HISDSITMLA PLKGHERVIT GIALPTGSDK LYTGSKDGTV  300
RMWDCQTGQC SGVINIGHEV GCMIIEGAWL FVGIPDAVKV WNMQTAAEMN LTGPAGQVYA  360
LAVANELLFA ATQDGRILAW RFSATTNCFE PAASLVGHQL AVVSLVVGGM RLYSASMDKT  420
IKGALALSGM PDAQSKPVLL CSLNDNTVRL YDLPSFSDRG RIFSKQEIRA IQMGPSGLFF  480
TGDGTGELKV WQWIIEGSQT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454483.10.0zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A0D3F8V10.0A0A0D3F8V1_9ORYZ; Uncharacterized protein
STRINGOGLUM02G28370.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]