PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02166.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 522aa    MW: 56884.7 Da    PI: 6.6204
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02166.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS176.91.5e-54872502174
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                    +lLl+cAeav+ ++l++a+ lL ++ elasp g++ +R+aayf  AL ar+++s  + y+ l++ +++     +++ a++
  Zmw_sc02166.1.g00110.1.am.mk  87 LTLLLRCAEAVAVDQLTEARDLLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLAAAQSR-----SVAGAFQ 162
                                   579***************************************************999999988888887.....6778999 PP

                          GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163
                                   +++ +sP++kf+h+taNqaIl+a++ge+r+H++D+di+qGlQWp L++ LasRp+ p slRiTg+g+    s + le+tg+
  Zmw_sc02166.1.g00110.1.am.mk 163 AYNALSPLVKFAHFTANQAILQALDGEDRLHVVDLDIMQGLQWPGLFHILASRPRRPRSLRITGLGA----SLDVLEATGR 239
                                   *******************************************************************....9********* PP

                          GRAS 164 rLakfAeelgv 174
                                   rLa+fA++lg+
  Zmw_sc02166.1.g00110.1.am.mk 240 RLADFAASLGL 250
                                   ********997 PP
2GRAS220.77.3e-68254506121373
                          GRAS 121 qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl......vakrledleleeL. 194
                                    GlQWp L++ LasRp+ p slRiTg+g+    s + le+tg+rLa+fA++lg+pfef+++      va++ + l +++  
  Zmw_sc02166.1.g00110.1.am.mk 254 XGLQWPGLFHILASRPRRPRSLRITGLGA----SLDVLEATGRRLADFAASLGLPFEFRPVegkighVADAAALLGPRDHh 330
                                   79***************************....9**************************966555444455555444434 PP

                          GRAS 195 .rvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                                    +  +     +Ea++V++++  h l+d ++s       +++l+ksl+Pk++++veq++ + s++Fl rf+eal+yysalfd
  Zmw_sc02166.1.g00110.1.am.mk 331 hH--HqrqqrDEATVVHWMH--HCLYDVTGSDMG----TVRLLKSLRPKLITIVEQDLGY-SGDFLGRFVEALHYYSALFD 402
                                   41..234456*********9..888888888888....**********************.899***************** PP

                          GRAS 270 sl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                                   +l +    +e+ er+ vEr+llg ei+n+va  g +r+ + + +e+W++ l++aGF++v+l  + a+qa++ll +++ +gy
  Zmw_sc02166.1.g00110.1.am.mk 403 ALgDGATEEEAAERHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWSDELRRAGFRSVSLAGSPATQARMLLGMYPLKGY 482
                                   **766667777*************************998887.9************************************* PP

                          GRAS 350 rveeesgslvlgWkdrpLvsvSaW 373
                                   ++ ee+ +l lgWkd +L+++SaW
  Zmw_sc02166.1.g00110.1.am.mk 483 TLVEEDWCLRLGWKDLSLLTASAW 506
                                   ************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.660487IPR005202Transcription factor GRAS
PfamPF035145.2E-5287250IPR005202Transcription factor GRAS
PfamPF035142.5E-65254506IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MIRVTGNTRN EELLALIDRR PADAMLQGVL SRAPTTTTAT DAAATKAKRP ASAEEEEEEG  60
QERRKRLQAL VVGAEGEGAE TKGLRLLTLL LRCAEAVAVD QLTEARDLLP EIAELASPFG  120
SSPERVAAYF GDALCARVLS SYLGAYSPLA AAQSRSVAGA FQAYNALSPL VKFAHFTANQ  180
AILQALDGED RLHVVDLDIM QGLQWPGLFH ILASRPRRPR SLRITGLGAS LDVLEATGRR  240
LADFAASLGL XXXXGLQWPG LFHILASRPR RPRSLRITGL GASLDVLEAT GRRLADFAAS  300
LGLPFEFRPV EGKIGHVADA AALLGPRDHH HHHQRQQRDE ATVVHWMHHC LYDVTGSDMG  360
TVRLLKSLRP KLITIVEQDL GYSGDFLGRF VEALHYYSAL FDALGDGATE EEAAERHAVE  420
RQLLGAEIRN IVAVGGPKRT GEVRVERWSD ELRRAGFRSV SLAGSPATQA RMLLGMYPLK  480
GYTLVEEDWC LRLGWKDLSL LTASAWAPAD DDDVAAAARH DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1399250824379Protein SCARECROW
5b3h_D1e-1399250824379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958062.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-150SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A3L6QTZ50.0A0A3L6QTZ5_PANMI; Scarecrow-like protein 23
STRINGSi032551m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]