PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02184.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 132aa MW: 14313.9 Da PI: 7.6207

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02184.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	81	132	3	54
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 k+ +++keq + Lee F+ n++++ +++e LA kl+L rqV vWFqNrRa+ Zmw_sc02184.1.g00180.1.am.mk 81 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRAR 132 67789*********************************************98 PP
2	HD-ZIP_I/II	77	3.3e-25	81	132	2	53
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRAR Zmw_sc02184.1.g00180.1.am.mk 81 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRAR 132 9**************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-18	60	132	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.42E-18	71	132	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.827	76	132	IPR001356	Homeobox domain
SMART	SM00389	1.6E-8	78	132	IPR001356	Homeobox domain
CDD	cd00086	1.79E-14	79	132	No hit	No description
Pfam	PF00046	1.3E-15	81	132	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MGATSPSAPS GLELTMAVPG LSSSSGSEGF AGCNNNSNGG TGNSHVRVDL DMNQPASGGE 60 EEMGSVEEDE EERGGGPHRP KKLRLSKEQS RLLEESFRLN HTLTPKQKEA LAVKLKLRPR 120 QVEVWFQNRR AR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819203.1	2e-60	homeobox-leucine zipper protein HOX3-like
Swissprot	Q0JKX1	1e-58	HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
Swissprot	Q9XH38	1e-58	HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBL	A0A2T7DJ80	1e-59	A0A2T7DJ80_9POAL; Uncharacterized protein
STRING	Pavir.Eb01766.1.p	3e-57	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6826	35	49