PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02209.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TALE

Protein Properties

Length: 528aa MW: 58054.8 Da PI: 9.274

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02209.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.3e-09	455	489	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 + +yps++e+ LA+++gL+++q+ +WF N+R ++ Zmw_sc02209.1.g00120.1.am.mk 455 EWPYPSETEKIALAQSTGLDQNQINNWFINQRKRH 489 669*****************************885 PP
2	ELK	37.1	6.5e-13	409	430	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLl+KYsgyL+sL+qEFs Zmw_sc02209.1.g00120.1.am.mk 409 ELKYQLLKKYSGYLSSLRQEFS 430 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	1.0E-19	224	268	IPR005540	KNOX1
Pfam	PF03790	2.1E-20	225	266	IPR005540	KNOX1
SMART	SM01256	3.8E-27	272	323	IPR005541	KNOX2
Pfam	PF03791	1.6E-22	278	321	IPR005541	KNOX2
SMART	SM01188	1.2E-7	409	430	IPR005539	ELK domain
PROSITE profile	PS51213	11.627	409	429	IPR005539	ELK domain
Pfam	PF03789	6.9E-10	409	430	IPR005539	ELK domain
PROSITE profile	PS50071	12.779	429	492	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-19	430	504	IPR009057	Homeodomain-like
SMART	SM00389	6.8E-13	431	496	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.6E-27	434	493	IPR009057	Homeodomain-like
CDD	cd00086	2.52E-12	441	493	No hit	No description
Pfam	PF05920	4.7E-16	449	488	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	467	490	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MNNACSRPRK KPCRSTRLSL SEYSTSISPP VSSPVRFDAR KGVATSTDAH RGPDCPLALA 60 HTFPFTVHSP SSNLINISLP STLSLPLPAA LHGHDRHYWC GEKREKLQSS PGPAGRLLCI 120 PNFSVRLASA RFWPVYFMDQ SFVNLGAGGC SSGASNSKPA APGSSSFLQL PLSSTTVAAP 180 AGVAYYGAPL TLLHQVAGPS PAASQSQSQY GRHAEMSMSP AKVGAVKAKI VAHPQYSALL 240 AAFLDCQKVG APPDLVEKLT ATAAKLDARP PPNRHEPRDP ELDQFMEAYC NMLAKYREEL 300 RRPIDEATEF IKRLEAQLDS ISGATATAAR LSLAGESLPG LRFHLSYGSE EPGLLLSFIT 360 RPRLSNGSGH TFQQTYGKSE GAGSSEDDMD ASGRGNEPPE IDPRTEYKEL KYQLLKKYSG 420 YLSSLRQEFS KKKKKGKLPK EARQKLLHWW ELHYEWPYPS ETEKIALAQS TGLDQNQINN 480 WFINQRKRHW KPSEDMPFVM MEGFHPQNSA AFYLDGPFMA DGMYRLGS

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MNNACSRPRK KPCRSTRLSL SEYSTSISPP VSSPVRFDAR KGVATSTDAH RGPDCPLALA  60
HTFPFTVHSP SSNLINISLP STLSLPLPAA LHGHDRHYWC GEKREKLQSS PGPAGRLLCI  120
PNFSVRLASA RFWPVYFMDQ SFVNLGAGGC SSGASNSKPA APGSSSFLQL PLSSTTVAAP  180
AGVAYYGAPL TLLHQVAGPS PAASQSQSQY GRHAEMSMSP AKVGAVKAKI VAHPQYSALL  240
AAFLDCQKVG APPDLVEKLT ATAAKLDARP PPNRHEPRDP ELDQFMEAYC NMLAKYREEL  300
RRPIDEATEF IKRLEAQLDS ISGATATAAR LSLAGESLPG LRFHLSYGSE EPGLLLSFIT  360
RPRLSNGSGH TFQQTYGKSE GAGSSEDDMD ASGRGNEPPE IDPRTEYKEL KYQLLKKYSG  420
YLSSLRQEFS KKKKKGKLPK EARQKLLHWW ELHYEWPYPS ETEKIALAQS TGLDQNQINN  480
WFINQRKRHW KPSEDMPFVM MEGFHPQNSA AFYLDGPFMA DGMYRLGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10080693}.
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10080693, ECO:0000269\|PubMed:9869405}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004955415.1	1e-170	homeobox protein rough sheath 1
Swissprot	O65034	1e-146	KNOSC_ORYSI; Homeobox protein knotted-1-like 12
Swissprot	O80416	1e-146	KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBL	A0A368PV50	1e-168	A0A368PV50_SETIT; Uncharacterized protein
STRING	Pavir.Bb00225.1.p	1e-167	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4061	38	73

Publications ? help Back to Top
Sato Y, et al. Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants. EMBO J., 1999. 18(4): p. 992-1002 [PMID:10022841] Ito Y,Eiguchi M,Kurata N KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice. Genesis, 2001. 30(4): p. 231-8 [PMID:11536429] Nagasaki H,Sakamoto T,Sato Y,Matsuoka M Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15. Plant Cell, 2001. 13(9): p. 2085-98 [PMID:11549765] Postma-Haarsma AD, et al. Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice. Plant Mol. Biol., 2002. 48(4): p. 423-41 [PMID:11908517] Kuijt SJ, et al. Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice. Plant Mol. Biol., 2004. 55(6): p. 781-96 [PMID:15604716] Yin H, et al. SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice. Planta, 2013. 237(1): p. 15-27 [PMID:22956125]