PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02214.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 488aa    MW: 51945.4 Da    PI: 7.6452
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02214.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.16.4e-27307366258
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                   dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r ++dp + e+tY g+H++
  Zmw_sc02214.1.g00010.1.am.mk 307 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnfyGCEAKKKVQRLDDDPFTYEVTYCGNHTC 366
                                   8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-26303366IPR003657WRKY domain
SuperFamilySSF1182904.05E-24305366IPR003657WRKY domain
SMARTSM007744.8E-37306368IPR003657WRKY domain
PROSITE profilePS5081121.494307364IPR003657WRKY domain
PfamPF031063.8E-25307366IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MLHVVVLASL AVLCRGLGSS KEKFHQVVGQ RREDDIASSP PSPSEATQTP LFMHVLARRP  60
SPHHPFTFDL GDTTNIKQKI AGDDPLGQQG AMDDVLAQIS DAFRLARELM DELPASQNDP  120
AYLANRCHSI IRAYVAAIRM LQPHGGADVA AQPPPPPFAS DLLRLWCADK QVAGGTAANP  180
FLGSPPSMSQ LGRLLESSSS SFHTLAEAFG GARPAPEMAR TGPDVAGTSG GPVRRVAPSS  240
RGSTRIQPRQ GRRRYSSNLG GDPLFYVIGV ERPPNFPRAH LARESGERLT VFVPVQRAGG  300
NMDQPPDDGY TWRKYGQKDI LGSRYPRSYY RCTHKNFYGC EAKKKVQRLD DDPFTYEVTY  360
CGNHTCLTST TPLLTLPATA GTRADTVAAN SPTSSAAILA HPDITMAAAE HHPAPALSTS  420
IQLGMTWMPS SLVGASSTSA GAGEGSGAQA HVPTAAGTGR DVEYPLMDLT DAIFNSGSSG  480
GSSMDAIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-21307366968OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439531.21e-119probable WRKY transcription factor 17
TrEMBLA0A1Z5R1R11e-117A0A1Z5R1R1_SORBI; Uncharacterized protein
STRINGSi025307m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344