PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02218.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 376aa    MW: 40597 Da    PI: 6.9505
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02218.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.1e-12111156454
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   +h e+Er+RRd++N  f  Lr  +P+       +++Ka+ L  A  YI +L
  Zmw_sc02218.1.g00160.1.am.mk 111 SHVEAERKRRDKLNRLFCDLRAAVPTV-----SRMDKASLLADAASYITEL 156
                                   799***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.405107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.42E-12110161No hitNo description
Gene3DG3DSA:4.10.280.102.7E-15111170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15111178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9111156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF135783.8E-8263330No hitNo description
Gene3DG3DSA:3.40.50.1503.5E-6271353IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.46E-5272347IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDGLLSPCSS FSPPSPASFS HVGNPVIEFA SCEVPEQWLH DVVAPKYEGY DHGDEELVWP  60
VGCTRSPASE HSEKPPPQQQ DPSVTAPAQR SAGMKRRARK PGPSQDVPFV SHVEAERKRR  120
DKLNRLFCDL RAAVPTVSRM DKASLLADAA SYITELRARV ARLEAEAKRA GPKTRPWEPV  180
AASRGGAVEE AVEVRMVGSD AAAVRVLGGA PHAPARLMDA LRALDLNVQH ACVSRVNGVT  240
VQDVVVDVPD RLLDGDGLRT LLAQMLQGTA ERVLPLPFST ASALRALCEW GVQADLIEVD  300
AGHDFHSAWA DINLAWAVLR PGGVMFGHDY FTAADDRGVR RAVTLFARVK GLTVTPNGQH  360
WVLSPKPPAR GHGDAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-16110166763Transcription factor MYC2
5gnj_B2e-16110166763Transcription factor MYC2
5gnj_E2e-16110166763Transcription factor MYC2
5gnj_F2e-16110166763Transcription factor MYC2
5gnj_G2e-16110166763Transcription factor MYC2
5gnj_I2e-16110166763Transcription factor MYC2
5gnj_M2e-16110166763Transcription factor MYC2
5gnj_N2e-16110166763Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120ERKRRD
2116121RKRRDK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020404956.12e-87transcription factor MYC2
TrEMBLA0A060CZ296e-83A0A060CZ29_MAIZE; BHLH transcription factor (Fragment)
TrEMBLA0A3B6KLV35e-83A0A3B6KLV3_WHEAT; Uncharacterized protein
TrEMBLA0A446T9B75e-83A0A446T9B7_TRITD; Uncharacterized protein
TrEMBLA0A453LCH43e-83A0A453LCH4_AEGTS; Uncharacterized protein
STRINGTraes_5DL_5DA6E1A09.18e-88(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130