PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02243.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 451aa MW: 48203.1 Da PI: 9.1748

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02243.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.5	1.5e-10	106	153	2	53
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 r++ + Er RR+ +++ f+eLr llP skK + +++e++++YI Zmw_sc02243.1.g00020.1.am.mk 106 RTSTFMLERARRKLMKENFAELRALLPGV----SKKTNRETTVEETIRYIGV 153 89999*********************8....7**************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.42E-12	102	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.88E-9	103	159	No hit	No description
PROSITE profile	PS50888	12.481	104	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-11	104	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-8	106	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-8	110	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	3.82E-5	245	295	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MAQDGHHAGH LQGADGNGTP PPAITREPGF GESSNQASTW TPVPAVAAEV DGSNGKGDDV 60 VSSVHGAGLA AGNVDAGADV MVAEEDVSTK SKGKAPASDG AGKKARTSTF MLERARRKLM 120 KENFAELRAL LPGVSKKTNR ETTVEETIRY IGVLEDTVKT FEKRKQELAL ERERRQAAAQ 180 PDLGAGPSSA AAPPDAGQVP ILSPVLPQGW CWLPKQQPAA PRAVAEQPRV GFRTWTDSNV 240 VMNVCGDTAF ITVCAAPRPG VLVLVLSVLA KHHIDVLTLE ISSDANRSLF HMCTRVCRYP 300 ILLNLSSSFL VVVLSARSKT LAPKSAANTW ARADVTRFGE LICVDIQRSK GTYMFDPLRV 360 RAHVMTAPPS VEASASQARR PVLICSALSL LRDEAIDKDP DRVPKRRLEL GPFRRPPPSG 420 ALLSCPTVTT TRLARLGSSL SSTLGQMFLE C

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MAQDGHHAGH LQGADGNGTP PPAITREPGF GESSNQASTW TPVPAVAAEV DGSNGKGDDV  60
VSSVHGAGLA AGNVDAGADV MVAEEDVSTK SKGKAPASDG AGKKARTSTF MLERARRKLM  120
KENFAELRAL LPGVSKKTNR ETTVEETIRY IGVLEDTVKT FEKRKQELAL ERERRQAAAQ  180
PDLGAGPSSA AAPPDAGQVP ILSPVLPQGW CWLPKQQPAA PRAVAEQPRV GFRTWTDSNV  240
VMNVCGDTAF ITVCAAPRPG VLVLVLSVLA KHHIDVLTLE ISSDANRSLF HMCTRVCRYP  300
ILLNLSSSFL VVVLSARSKT LAPKSAANTW ARADVTRFGE LICVDIQRSK GTYMFDPLRV  360
RAHVMTAPPS VEASASQARR PVLICSALSL LRDEAIDKDP DRVPKRRLEL GPFRRPPPSG  420
ALLSCPTVTT TRLARLGSSL SSTLGQMFLE C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	401	406	RVPKRR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP24803	3	5