PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02252.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 735aa    MW: 77860.5 Da    PI: 6.6066
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02252.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS176.32.3e-54622561200
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                   lv++L++cA a+++gd + aq+ L   + +  a ++++ + R+a +f+ AL++rl+   ++ + a pp +t          
  Zmw_sc02252.1.g00030.1.am.mk  62 LVHVLVTCAGAIQAGDYSTAQSNLRDAHSIlaAISTATGIGRVAEHFAAALSQRLFPAYPHSAPAPPPPAT-------PGE 135
                                   689***********************999985556669*******************55555544444333.......345 PP

                          GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160
                                    ++ f+e+ P+lkf++ taN aIl+a+eg++rvH++D+ ++qGlQWp L++aL++R++gpp lRiTg+g+  +g+++el+e
  Zmw_sc02252.1.g00030.1.am.mk 136 LQHQFYEAGPYLKFAYSTANMAILDAFEGCDRVHVVDLALMQGLQWPELIHALSKRSGGPPYLRITGIGPTPTGNRDELHE 216
                                   5677******************************************************************8888******* PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                                    g rLa++A++l+vpf+f+ + a++l+ l++++L++ pgE
  Zmw_sc02252.1.g00030.1.am.mk 217 AGLRLAELARSLNVPFSFRRVCADQLDGLRPWMLNIVPGE 256
                                   **************************************99 PP
2GRAS165.15.8e-51256466157374
                          GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvksl 234
                                   el+e g rLa++A++l+vpf+f+ + a++l+ l++++L++ pgE++aVn++lqlhrll ++ + +    ++d++L+ ++++
  Zmw_sc02252.1.g00030.1.am.mk 256 ELHEAGLRLAELARSLNVPFSFRRVCADQLDGLRPWMLNIVPGEVVAVNSILQLHRLLVDPDADPTvpaPIDTLLDWLRGV 336
                                   68999****************************************************96655444444499********** PP

                          GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                                   +P+v++vveqeadhn++s+l+rf++al +y+a+fds+ea           + +++l+ ei +vv+ eg++r+erhe +++W
  Zmw_sc02252.1.g00030.1.am.mk 337 RPHVFTVVEQEADHNKPSLLDRFTNALFHYAAMFDSMEAA----GGSGGALAEAYLRAEIFDVVCGEGSARTERHELASRW 413
                                   *************************************998....56677788888************************** PP

                          GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   r+rl +    +++l   ++ +        ++ g+ v e +gsl lgW+drpL+sv+aWr
  Zmw_sc02252.1.g00030.1.am.mk 414 RARLARXXXXAAALPRLVTPS------SLAGAGFGVLECDGSLALGWHDRPLYSVTAWR 466
                                   *****9988777776554432......33467899***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.17236452IPR005202Transcription factor GRAS
PfamPF035147.8E-5262256IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MDPASFAALT GAVPLPPPSA TTNGAVYCVN PGLYASPAAP AAAPEADAAR RQQAEEAAAI  60
RLVHVLVTCA GAIQAGDYST AQSNLRDAHS ILAAISTATG IGRVAEHFAA ALSQRLFPAY  120
PHSAPAPPPP ATPGELQHQF YEAGPYLKFA YSTANMAILD AFEGCDRVHV VDLALMQGLQ  180
WPELIHALSK RSGGPPYLRI TGIGPTPTGN RDELHEAGLR LAELARSLNV PFSFRRVCAD  240
QLDGLRPWML NIVPGELHEA GLRLAELARS LNVPFSFRRV CADQLDGLRP WMLNIVPGEV  300
VAVNSILQLH RLLVDPDADP TVPAPIDTLL DWLRGVRPHV FTVVEQEADH NKPSLLDRFT  360
NALFHYAAMF DSMEAAGGSG GALAEAYLRA EIFDVVCGEG SARTERHELA SRWRARLARX  420
XXXAAALPRL VTPSSLAGAG FGVLECDGSL ALGWHDRPLY SVTAWRAAGA DAAGAVIDTL  480
QEVGRDDGNG RNGSAESYGG GNVGGAFDGT VFMLPQCSEC SRELDTNLHV GERRAAHGSQ  540
PVKCSLQRSC APYSKPSPAT APTGIRSSST PPCDATHGHA LTSCRCRAFC SFCSRQPQTC  600
TSQHAAERST NQEEDEAQTV RRINQTTTAG AGVGRVCCRA GWLVAGATDG LNCHGGPFHQ  660
LLAQTSGSRQ RSQQRASPSD GSNHDDDGAV DLPRPSAQRR FNRVAAAGAE EAPALAPDAV  720
APFLARRSGL GCFSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-35444652377Protein SCARECROW
5b3h_D2e-35444652377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963578.11e-172DELLA protein DWARF8
TrEMBLA0A1E5UN440.0A0A1E5UN44_9POAL; DELLA protein DWARF8
STRINGSi024429m1e-171(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138