PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02253.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 714aa MW: 78350.5 Da PI: 7.5267

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02253.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.6e-29	506	557	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rkik++ Zmw_sc02253.1.g00010.1.sm.mk 506 AEKTVSLQVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKIKKV 557 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.939	494	577	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-25	509	557	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MEGGGGGDPR PSVSLARTPS EGDWSLLEQL LSGDNAWFEV ASRSPNSLAS PPPTTAFLAA 60 ADATATNANT AGWLLQTGPS SVRERFDQAL SYIRETQSDG DVLVQLWVPV KGHDGQLLLT 120 TSGQPFTLDQ RSDSLIRFRE VSTKYHFSGD VMSGTPGLPG RVFIGRLPEW SPDVRYFTSH 180 EYPRVSHAQI LDVHGTMGLP VFEKGSYSCL GVIELIMTKQ KLNFTPELNA ICSALQFSSA 240 SYKDALPEIL EVLKAACLIH KLPLAQTWVT CAQQGKRGSR HSDENYRYCI SPIDEACFVN 300 EPRMQNFHEA CSEHHLLRGQ GVAGKAFTTN QPCFLPDIGS STKLEYPLSH HAKIFNLKGA 360 VAIRLRCTRT GSADFVLEFF LPTDCEALEE QKAVLDSLSG TMRSVCRTLR VVTDKEMENE 420 AVLEMNELNS FTPQGKNRVE ELSFGDNSRD RRGETSWTSL AETSQHESEF AALRMHGLVP 480 SEGQDPSTSG VQRAAEGSKA KKRTKAEKTV SLQVLRQYFA GSLKDAARSL GVCPTTLKRI 540 CRQHGITRWP SRKIKKVDHS LKKLQQIIDS VHGAETAFQL NTLYKDLTNT SISSDNNLSG 600 SITDVTEKAN GLQHYSRSPT APKQNADVSM RVKATFGSEK SLQKTTQQPF LTQDTIPIQD 660 TGSTRVAVPF GMICTPPATT GVSAIIQPAK QVDMWTSGCL GAWRGQQGVW AMDT

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MEGGGGGDPR PSVSLARTPS EGDWSLLEQL LSGDNAWFEV ASRSPNSLAS PPPTTAFLAA  60
ADATATNANT AGWLLQTGPS SVRERFDQAL SYIRETQSDG DVLVQLWVPV KGHDGQLLLT  120
TSGQPFTLDQ RSDSLIRFRE VSTKYHFSGD VMSGTPGLPG RVFIGRLPEW SPDVRYFTSH  180
EYPRVSHAQI LDVHGTMGLP VFEKGSYSCL GVIELIMTKQ KLNFTPELNA ICSALQFSSA  240
SYKDALPEIL EVLKAACLIH KLPLAQTWVT CAQQGKRGSR HSDENYRYCI SPIDEACFVN  300
EPRMQNFHEA CSEHHLLRGQ GVAGKAFTTN QPCFLPDIGS STKLEYPLSH HAKIFNLKGA  360
VAIRLRCTRT GSADFVLEFF LPTDCEALEE QKAVLDSLSG TMRSVCRTLR VVTDKEMENE  420
AVLEMNELNS FTPQGKNRVE ELSFGDNSRD RRGETSWTSL AETSQHESEF AALRMHGLVP  480
SEGQDPSTSG VQRAAEGSKA KKRTKAEKTV SLQVLRQYFA GSLKDAARSL GVCPTTLKRI  540
CRQHGITRWP SRKIKKVDHS LKKLQQIIDS VHGAETAFQL NTLYKDLTNT SISSDNNLSG  600
SITDVTEKAN GLQHYSRSPT APKQNADVSM RVKATFGSEK SLQKTTQQPF LTQDTIPIQD  660
TGSTRVAVPF GMICTPPATT GVSAIIQPAK QVDMWTSGCL GAWRGQQGVW AMDT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	499	505	AKKRTKA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800527.1	0.0	protein NLP1-like isoform X2
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A3L6QR05	0.0	A0A3L6QR05_PANMI; Protein NLP1 isoform X2
STRING	Pavir.Bb02544.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]