PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02263.1.g00150.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 621aa    MW: 68319.6 Da    PI: 4.8699
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02263.1.g00150.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.2e-082252581245
                                     HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS
                        Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqVk 45 
                                      + L+++Fekn+yps++++e LA++lgLt  qV 
  Zmw_sc02263.1.g00150.1.sm.mkhc 225 KQKLKDHFEKNPYPSRATKESLARELGLTFIQVA 258
                                     689**************************88885 PP
2Homeobox29.99.6e-104484881252
                                     HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
                        Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                                      + L+  F k++yps+++ + LA++lgLt  qV+ WF+  R
  Zmw_sc02263.1.g00150.1.sm.mkhc 448 NQKLKVQFGKDPYPSRSTLQSLAQELGLTSIQVRRWFKSTR 488
                                     578999*******************************8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-9204272IPR009057Homeodomain-like
PROSITE profilePS5007110.268211282IPR001356Homeobox domain
SMARTSM003894.2E-8214286IPR001356Homeobox domain
SuperFamilySSF466892.57E-8218258IPR009057Homeodomain-like
CDDcd000862.37E-10218280No hitNo description
PfamPF059209.7E-6234276IPR008422Homeobox KN domain
Gene3DG3DSA:1.10.10.601.3E-9429488IPR009057Homeodomain-like
SuperFamilySSF466891.24E-9430488IPR009057Homeodomain-like
PROSITE profilePS5007112.455434488IPR001356Homeobox domain
SMARTSM003898.3E-9436498IPR001356Homeobox domain
CDDcd000861.16E-9437488No hitNo description
PfamPF000463.0E-7448488IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MMVKVGKVKG EIFSEDFLWG MKDGFVLHKI FPEAASSAND SKQLDASVLP LCDPENNDYS  60
RSLVEGHIVN EGRFSAKNDG KVDDLGLPSE DSEDDDFDPA GLDSSEDQKG ELHSEESDFT  120
SDSDEFCVEI AKYFGQDGTS EAYGEESSSS SDDEEWSGKE KLEDSETYGS VRSAKRRSGR  180
PSAGDPISQH TPPSQRHYAS ASEQHTEVRS NGSNSASRRF GPIIKQKLKD HFEKNPYPSR  240
ATKESLAREL GLTFIQVATP DLFFYLQVDK WFASTRHSSR VAAAKKEKCT GNRTTENNDG  300
VTVDRAQVRA PNNAMLAELT AGRNDMVHEE VMVQNNLDGG NKEDILLPRA ETETGGYENE  360
SSDPSDEKEW SGTSASQKEL QDNETDSRAT SNRTKRLARR APVQPQNNEH TPLSEQLHGS  420
VKEQLTEAPC SNGSSSKARK YHFGPIANQK LKVQFGKDPY PSRSTLQSLA QELGLTSIQV  480
RRWFKSTRHY SGISAAKKGN NEKNGSTTVD SIQGMENTYG VMENPNKDRN DMVSRNLMLQ  540
INLNEGSIDD IFLSQHPSSE ERVVTTPTAL SRELGPPGYG PGESQGKSAL WNTGFEQGLI  600
TTPPAVSKDV VLPGYGPGES H
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269|PubMed:21951842}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:21951842}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814927.11e-154uncharacterized protein LOC112892070 isoform X3
SwissprotQ8H9912e-43HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBLA0A1E5V1T01e-164A0A1E5V1T0_9POAL; Homeobox protein HOX1A
STRINGPavir.Eb03127.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW
    Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1.
    J Integr Plant Biol, 2011. 53(11): p. 869-78
    [PMID:21951842]