PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02291.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 260aa MW: 27969.6 Da PI: 8.3731

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02291.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.2	8e-10	78	126	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54 +e+ErrRR++++s ++L +l+Pk +s K ++ L +A YIk+L Zmw_sc02291.1.g00070.1.am.mk 78 KEIERRRRQHMKSLCSKLVSLIPKeH---YSSKntMTQLGSLDEAAAYIKKL 126 79********************55...45444799***********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-10	64	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.664	72	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-12	77	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.95E-7	77	130	No hit	No description
SMART	SM00353	2.7E-7	78	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-7	78	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MPCRAAAKHE VARSTISTSL LCQLAENELK RGRLSGREME KTAKKSGSGD TAAAAGKRSS 60 TSNNNSGSSG TTAAVDRKEI ERRRRQHMKS LCSKLVSLIP KEHYSSKNTM TQLGSLDEAA 120 AYIKKLKERV DDLHQKRSSA QLLASMRGGG VGASTSVAAV TAMSSDAGSS EEVAVAEDES 180 VAPVVEVRQH DDGLGLDVVL ISSVERPFKM HDVVTVLEEE GAEIINANFS VAGRKNFYTI 240 HCRVQPAFDT FSLYVYICCA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967960.1	4e-75	transcription factor bHLH162
Refseq	XP_012701590.1	4e-75	transcription factor bHLH162
TrEMBL	A0A1E5VNC8	5e-76	A0A1E5VNC8_9POAL; Uncharacterized protein
STRING	Sb03g008570.1	1e-78	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133