PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02296.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 187aa MW: 19861.5 Da PI: 9.9826

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02296.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	104.9	1.3e-32	73	140	5	72
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 ++++ ++hTkv gR+RRvR+++ +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++ Zmw_sc02296.1.g00020.1.sm.mk 73 RRTSADRHTKVAGRGRRVRIPVMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEA 140 67889********************************************************7777633 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	25.321	76	130	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.4E-27	76	138	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MAFSPTTRRP HLAAPIPSFP SNSKQMSSPS EIVLYNVVPT QTLNPAPATA ADLSVSASAP 60 QPQQQIPVRG RGRRTSADRH TKVAGRGRRV RIPVMVAARV FQLTRELGHR TDGETIEWLL 120 RQAEPSIIAA TGTGVTPEEA PPAAVPVAGS AAAPYMPVPY YTSLLMQPPP VEESAASASV 180 TNAEENH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823176.1	3e-66	transcription factor PCF1-like
Swissprot	O23875	3e-56	PCF1_ORYSJ; Transcription factor PCF1
TrEMBL	A0A3L6Q550	4e-66	A0A3L6Q550_PANMI; Transcription factor PCF1-like
STRING	BRADI5G02880.1	6e-65	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14172	26	27