PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02311.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 277aa    MW: 30205.8 Da    PI: 4.3384
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02311.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-05254274222
                                     EETTTTEEESSHHHHHHHHHH CS
                         zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                                     +C+ C+k+F++ + L+ H + 
  Zmw_sc02311.1.g00090.1.am.mkhc 254 SCNSCSKTFNSEMALQDHKKA 274
                                     7*****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.91E-5247277No hitNo description
PROSITE profilePS5015710.554253277IPR007087Zinc finger, C2H2
PROSITE patternPS000280255277IPR007087Zinc finger, C2H2
PfamPF128742.5E-4255277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAVKCVPGDD YILHLSQAAL GESKKANDNA IMYVKVDDQK LAIGTLSADK YPQIQFDLVF  60
EKEFELSHTS KAASVFFSGY KVLQPVEGDE MDLDSEEDED EEEEEEINNP VVMKNGKAQG  120
KEEAKVGRPS AAVSKANAVA LDVEKKRNND DSDEDETDDD DDLSSEEEED GSSDEDDSSK  180
DDESDEDDEE ETPKKPEAGK KRVAENALKT PASDKKAKVA TLSGQKTGSK NTHVATPHPA  240
KHSSKTPKSG GSMSCNSCSK TFNSEMALQD HKKAKKH
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654887.12e-90PREDICTED: histone deacetylase HDT2-like isoform X2
SwissprotQ9M4U51e-86HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLJ3MAF35e-89J3MAF3_ORYBR; Uncharacterized protein
STRINGPavir.J01431.1.p2e-94(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065