PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02318.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 204aa    MW: 22124.3 Da    PI: 10.4568
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02318.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-0887134347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                     +WT  E  +lvd+v+++G g W+ I +        Rt  ++k++w+++
  Zmw_sc02318.1.g00080.1.sm.mkhc  87 AWTLCEVMKLVDGVALYGAGKWSEIRKLAFssySYRTSVDLKDKWRNL 134
                                     7***************************999**99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.63580139IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-1282138IPR009057Homeodomain-like
SuperFamilySSF466896.71E-1582137IPR009057Homeodomain-like
SMARTSM007173.0E-784137IPR001005SANT/Myb domain
CDDcd116601.71E-1786136No hitNo description
PfamPF002495.4E-687134IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGYDSSKLEA AAIDTKKLHA GLEDNIHSGK CEEASTTVGV MLGKDGKVGN HTRKVNAVKG  60
GHAEAVENKG VRKPKKNQAF TRKHHRAWTL CEVMKLVDGV ALYGAGKWSE IRKLAFSSYS  120
YRTSVDLKDK WRNLIRASKT QLHAIEDGGC PRKTNPSIIP IPPSILLRVK ELNELQSQGS  180
GFAGPLQFSG SNGKVVQGKG SGFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314012.17e-71uncharacterized protein LOC110434400 isoform X2
TrEMBLA0A1D6HLX17e-77A0A1D6HLX1_MAIZE; TRF-like 6
STRINGPavir.J06110.1.p6e-70(Panicum virgatum)
STRINGGRMZM2G049194_P021e-68(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341