PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02330.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 264aa MW: 29093.2 Da PI: 5.006

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02330.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.3	1.8e-05	215	234	10	29
HHHHHHHHHHHHHHHCTSCC CS HLH 10 rrRRdriNsafeeLrellPk 29 r+RR+riN+++ L+ l+P+ Zmw_sc02330.1.g00070.1.sm.mk 215 RKRRERINERLRILQNLVPN 234 9******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.02E-6	206	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-4	210	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.92E-4	214	238	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MDSPYISSNP SMEIDVMEQF LGAHDHCFTY EHVDESVEAM AALFFPCLDT DSNSSSSCLY 60 SDVPPRCWPQ PDHSSSVTSL LDPAQSFKSF EFPVMDPLLS SDFESHKAIP YFTEDCSLHG 120 NHSSVREEEG ANDIYATKKR KSGAATKAPK KIKKCGKKDY VGSDDGGNSN VDTQSSSSCT 180 SENGNLEGNA NLSSMKTCTR ASRGAATDPQ SLYARKRRER INERLRILQN LVPNGTKLLS 240 SDDMWMYAPI AYNGINISNV DLNI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004959802.2	1e-127	transcription factor bHLH54
TrEMBL	A0A1E5UZQ7	1e-135	A0A1E5UZQ7_9POAL; Transcription factor bHLH84
STRING	Si032445m	1e-127	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12496	29	35