PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02346.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 330aa MW: 35076.2 Da PI: 8.8643

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02346.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.5	5.8e-33	134	192	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k++er+++d k v++tYeg+H he Zmw_sc02346.1.g00150.1.sm.mkhc 134 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHIERASNDLKSVITTYEGKHSHE 192 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-36	119	194	IPR003657	WRKY domain
SuperFamily	SSF118290	1.19E-28	126	194	IPR003657	WRKY domain
PROSITE profile	PS50811	36.575	129	194	IPR003657	WRKY domain
SMART	SM00774	1.7E-36	134	193	IPR003657	WRKY domain
Pfam	PF03106	4.0E-25	135	191	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MSAQAAKATF QKEFPLHPNV FNAFEKSNSH GGLAERRAAR AGFSVLKIDT SQVVDVSSTL 60 SIEEEERATH GTVSEDCDGD EDETESKRRK MDSLGAATIT SAATTSAVDM GAVASRSVRQ 120 PRVVVQTTSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC THPGCSVRKH IERASNDLKS 180 VITTYEGKHS HEVPAARNSG QAGSGSGSAP SATQACHRRQ EPAHGNFAHF GGTAPFGSLV 240 LPARGHLGPA EGNFHFGMVP PGMAIPMASL GSLAATKMIQ SSSAVQGYQG SMMPGELKVD 300 SVSRSSLTTG IAAPTAYQQI MSRPPYGPHM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-39	125	195	8	78	Probable WRKY transcription factor 4
2lex_A	8e-39	125	195	8	78	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802032.1	1e-138	LOW QUALITY PROTEIN: probable WRKY transcription factor 2
TrEMBL	A0A1E5WJ69	1e-147	A0A1E5WJ69_9POAL; Putative WRKY transcription factor 2
STRING	Pavir.J40119.1.p	1e-140	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12338	22	33