PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02357.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 427aa MW: 46375.1 Da PI: 4.7254

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02357.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	71.7	1.3e-22	147	195	1	49
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 +CqvegCeadl+ ak+yhrrhkvCe+h+ka++++v + qrfCqqCsr Zmw_sc02357.1.g00160.1.sm.mkhc 147 ACQVEGCEADLTAAKDYHRRHKVCEMHAKASTAVVGNAVQRFCQQCSRL 195 5**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.5E-24	140	195	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	18.7	145	222	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-21	146	195	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-16	148	195	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MEAAGFGAQS SHLYGVGLSE LDLNRRDKRV FGWDLNEWSW DSERFIATPV PASVPNGLEL 60 NSSPSSSEEA EAEVARNDAV RGDPEKRKRV VAIDDDEAEH QDCGGALSLK IGGDAGGPRT 120 VESGNVNEEE KNGKKIKVQG GSSSGPACQV EGCEADLTAA KDYHRRHKVC EMHAKASTAV 180 VGNAVQRFCQ QCSRLICSFE GRCIFQEDTA TITDDAELED RETEYSGFSN SFFPFIIAEQ 240 DTNLFRPDAL GPSTITPLHI AASTSDAEDV LDALTDDPGL VGISAWKNAR DDTGFTPEDY 300 ARQRGNDAYL NLVQKKIDKH TSGAHVVLGV PSSICPVGAD DMKLGDVSLE ICSSMPMAAP 360 MAKCYLCSHQ ARMYSRSSVR TFLYRPAMLM MMGVAVVCVC VGILLHTMPK VYAAPTFRWE 420 LLERGAM

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MEAAGFGAQS SHLYGVGLSE LDLNRRDKRV FGWDLNEWSW DSERFIATPV PASVPNGLEL  60
NSSPSSSEEA EAEVARNDAV RGDPEKRKRV VAIDDDEAEH QDCGGALSLK IGGDAGGPRT  120
VESGNVNEEE KNGKKIKVQG GSSSGPACQV EGCEADLTAA KDYHRRHKVC EMHAKASTAV  180
VGNAVQRFCQ QCSRLICSFE GRCIFQEDTA TITDDAELED RETEYSGFSN SFFPFIIAEQ  240
DTNLFRPDAL GPSTITPLHI AASTSDAEDV LDALTDDPGL VGISAWKNAR DDTGFTPEDY  300
ARQRGNDAYL NLVQKKIDKH TSGAHVVLGV PSSICPVGAD DMKLGDVSLE ICSSMPMAAP  360
MAKCYLCSHQ ARMYSRSSVR TFLYRPAMLM MMGVAVVCVC VGILLHTMPK VYAAPTFRWE  420
LLERGAM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	3e-19	144	195	2	53	squamosa promoter-binding protein-like 12
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003563064.1	4e-93	squamosa promoter-binding-like protein 6
Swissprot	Q75LH6	1e-85	SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBL	A0A3Q8ANR7	1e-98	A0A3Q8ANR7_BAMML; Squamosa-promoter binding protein-like protein
STRING	Traes_4AL_5062917C4.1	4e-93	(Triticum aestivum)
STRING	TRIUR3_33729-P1	5e-93	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]