PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02369.1.g00120.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 412aa    MW: 44505 Da    PI: 8.6511
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02369.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19235283355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a++ a+ +l+g
  Zmw_sc02369.1.g00120.1.am.mk 235 YRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDSAAFRLRG 283
                                   9******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-22234291IPR016177DNA-binding domain
SMARTSM003802.8E-38234297IPR001471AP2/ERF domain
PROSITE profilePS5103223.433234291IPR001471AP2/ERF domain
CDDcd000181.88E-31235293No hitNo description
PRINTSPR003678.1E-11235246IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-32235292IPR001471AP2/ERF domain
PfamPF008471.7E-13235283IPR001471AP2/ERF domain
PRINTSPR003678.1E-11257273IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MATNRTIRSG LRHRHLCLTT CSVPATRPQD DQLQERTLYY SNFQAAASST LSPRPARHSH  60
VTARSGLYQV RPSPPMEARQ VLAVCTSTCP VPRRESSRIH RLAAAALRAS TDLSVDSVSA  120
SVSSCSFAWR SLVREFMGTT VEWHGGVPAA ALYYAMPDAL YYAMPDSKEL VRGLAPPMHG  180
APTISFSAYP CAGVEQSAQI LGANGLTPAQ ALQVQSQLQY LRRPAPARGA LAALYRGVRQ  240
RHWGKWVAEI RLPRNRTRLW LGTFDTAEDA ALAYDSAAFR LRGDSARLNF PELRRGGAHL  300
GPPLHAAVDA KLHAICHGTD TPSQRQSDAP AATVTTAPSS VSSAGPKIKS EPVSSGSQSS  360
SSADGDVSST GSSDVVPEMQ LLDFSETPWD DSESFHLLKY PSLEIDWDAI LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20235291663ATERF1
3gcc_A2e-20235291663ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141968.11e-127uncharacterized protein LOC100274117
TrEMBLB4FZ511e-126B4FZ51_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G113060_P011e-127(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203