PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02370.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 417aa MW: 46874.7 Da PI: 6.5289

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02370.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	9.9e-07	11	34	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C ++r G C++ d+C+FaHg Zmw_sc02370.1.g00030.1.sm.mkhc 11 YKTKMCALWQR-GGCSR-DTCSFAHG 34 9********.*.*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	8.8E-12	5	40	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.67E-5	9	39	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.554	10	36	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MLGPPRRGPA YKTKMCALWQ RGGCSRDTCS FAHGSTELRR FPGSRTSFPP RLGVVTSETD 60 LIGDARLVGC IPLTEIPGVI VPFVTEDQLL KKGNLAIHVH PVGGGIERRH EKKPDDGETN 120 SSRSLSVSDN NDDRKDKLSS GDNKEDHEKQ LKGIREDMEI LRENKSHLEI ILEAKNVEVR 180 KFFSRINDLD LQLKKEKEEC HRMTSKMKKF IKAHGRLLKA QEELKRSQAR FERLGDLLAS 240 DILKRGANEE GSSINVDEDP YGYERSPNAA APRKRSSEEA KAVKKRREPD SDTISRPNKY 300 RSEGTVAELG KQNKGSETIK SSYLKKKLWE DEKDKLGNDV SSAKTDKVKD SPVYVLPSTG 360 MAAHAMDDPI EAVELENRHE QMDASLENDA DEETRLPIMR PCSLPPYEGD DEEVDVD

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MLGPPRRGPA YKTKMCALWQ RGGCSRDTCS FAHGSTELRR FPGSRTSFPP RLGVVTSETD  60
LIGDARLVGC IPLTEIPGVI VPFVTEDQLL KKGNLAIHVH PVGGGIERRH EKKPDDGETN  120
SSRSLSVSDN NDDRKDKLSS GDNKEDHEKQ LKGIREDMEI LRENKSHLEI ILEAKNVEVR  180
KFFSRINDLD LQLKKEKEEC HRMTSKMKKF IKAHGRLLKA QEELKRSQAR FERLGDLLAS  240
DILKRGANEE GSSINVDEDP YGYERSPNAA APRKRSSEEA KAVKKRREPD SDTISRPNKY  300
RSEGTVAELG KQNKGSETIK SSYLKKKLWE DEKDKLGNDV SSAKTDKVKD SPVYVLPSTG  360
MAAHAMDDPI EAVELENRHE QMDASLENDA DEETRLPIMR PCSLPPYEGD DEEVDVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	286	RKRSSEEAKAVKKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002451585.2	0.0	zinc finger CCCH domain-containing protein 13 isoform X1
Swissprot	Q6H7U2	1e-161	C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBL	A0A194YMV6	0.0	A0A194YMV6_SORBI; Uncharacterized protein
STRING	Si017193m	1e-173	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3882	29	43

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]