PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02382.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 734aa MW: 80300.8 Da PI: 10.0306

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02382.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.4e-05	668	692	7	31
HHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 7 erErrRRdriNsafeeLrellPkas 31 ++ rr R+r+Ns+++ Lr+++Pk+s Zmw_sc02382.1.g00020.1.am.mkhc 668 MAKRRWRKRVNSRLSMLRSIVPKNS 692 445666*****************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56801	4.84E-106	105	544	No hit	No description
Pfam	PF00501	1.2E-35	106	331	IPR000873	AMP-dependent synthetase/ligase
Gene3D	G3DSA:3.40.50.980	3.1E-23	107	256	No hit	No description
PROSITE pattern	PS00455	0	251	262	IPR020845	AMP-binding, conserved site
Gene3D	G3DSA:3.40.50.980	6.6E-17	257	332	No hit	No description
Pfam	PF00501	4.8E-34	341	451	IPR000873	AMP-dependent synthetase/ligase
Gene3D	G3DSA:2.30.38.10	1.6E-27	367	441	No hit	No description
Gene3D	G3DSA:3.30.300.30	1.6E-29	448	542	No hit	No description
Pfam	PF13193	1.3E-14	460	535	IPR025110	AMP-binding enzyme C-terminal domain
CDD	cd00083	0.00109	658	692	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0003824	Molecular Function	catalytic activity

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MRKVENVDGI ERRVWREGNG EVEGGVTATL LARYFTFSCP CRLARPSAHR RPTSHPLSPI 60 SSSVDPSSGY CAATGTFQSL RGPVPMPPPK CPFSFPALVF SLLPSQLPSH PALVDCATNE 120 AVPFPTFLSR VRALAAALRV RLLVSPGDVA FVLAPPSVHI PVLYYALMAI GAVVSPANPA 180 LTAGEISSLV ALSSPSIAFA VQETAAKLSP GLNTVLLDSP TFLWLLQETH HEGDMVPLND 240 VVTHQSDLAV ILYSSGTTGR AKAVELTHRN LISSAAALRV AAAEVLLLTV PIFHIYGFVF 300 CLRAVPAAQT LVMHTAKRFN ARELLTAVER HLWMLMSYSH LQKGYGLTET TAGFCRAVGV 360 EESTRIGSVG RLSYGAEAKI VHPKTGVALP PGMPGEIWVR GPFVMKGYRG DKDSTSAVLD 420 SEGWLRTGDI CYIDKDGFIF IIDRMKELIK YKGYQVPPAE LENLLQTHPH IEEAAVVPYP 480 DDRAGELPVA FIVGRSGHKL DEAQIKEFVA KQVVHYKRIH HVFVVKLIPK NAAGKILRKD 540 LANHCPPSLR MLVINIQVGK ARSDTGRIVQ LRNSRHLAFA ESGMQRRTCK VILPGLRSRR 600 RHRRSHFEAS RDSNASIKER DSGIDMCGNG SRAPCVSERE HGVLDSEGLC GSTHNRSRIH 660 RSQSKNLMAK RRWRKRVNSR LSMLRSIVPK NSEFDLEKLG NGSTRMDMCC LANLGADIHR 720 ERAGVAGAGD SSRA

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MRKVENVDGI ERRVWREGNG EVEGGVTATL LARYFTFSCP CRLARPSAHR RPTSHPLSPI  60
SSSVDPSSGY CAATGTFQSL RGPVPMPPPK CPFSFPALVF SLLPSQLPSH PALVDCATNE  120
AVPFPTFLSR VRALAAALRV RLLVSPGDVA FVLAPPSVHI PVLYYALMAI GAVVSPANPA  180
LTAGEISSLV ALSSPSIAFA VQETAAKLSP GLNTVLLDSP TFLWLLQETH HEGDMVPLND  240
VVTHQSDLAV ILYSSGTTGR AKAVELTHRN LISSAAALRV AAAEVLLLTV PIFHIYGFVF  300
CLRAVPAAQT LVMHTAKRFN ARELLTAVER HLWMLMSYSH LQKGYGLTET TAGFCRAVGV  360
EESTRIGSVG RLSYGAEAKI VHPKTGVALP PGMPGEIWVR GPFVMKGYRG DKDSTSAVLD  420
SEGWLRTGDI CYIDKDGFIF IIDRMKELIK YKGYQVPPAE LENLLQTHPH IEEAAVVPYP  480
DDRAGELPVA FIVGRSGHKL DEAQIKEFVA KQVVHYKRIH HVFVVKLIPK NAAGKILRKD  540
LANHCPPSLR MLVINIQVGK ARSDTGRIVQ LRNSRHLAFA ESGMQRRTCK VILPGLRSRR  600
RHRRSHFEAS RDSNASIKER DSGIDMCGNG SRAPCVSERE HGVLDSEGLC GSTHNRSRIH  660
RSQSKNLMAK RRWRKRVNSR LSMLRSIVPK NSEFDLEKLG NGSTRMDMCC LANLGADIHR  720
ERAGVAGAGD SSRA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5bsm_A	4e-70	105	541	36	532	4-coumarate--CoA ligase 2
5bsm_B	4e-70	105	541	36	532	4-coumarate--CoA ligase 2
5bsr_A	4e-70	105	541	36	532	4-coumarate--CoA ligase 2
5bst_A	4e-70	105	541	36	532	4-coumarate--CoA ligase 2
5bsu_A	4e-70	105	541	36	532	4-coumarate--CoA ligase 2
5bsv_A	4e-70	105	541	36	532	4-coumarate--CoA ligase 2
5bsw_A	3e-70	105	541	36	531	4-coumarate--CoA ligase 2
5bsw_B	3e-70	105	541	36	531	4-coumarate--CoA ligase 2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828340.1	0.0	4-coumarate--CoA ligase-like 7 isoform X1
Swissprot	Q69RG7	1e-143	4CLL7_ORYSJ; 4-coumarate--CoA ligase-like 7
TrEMBL	A0A3L6PGT6	0.0	A0A3L6PGT6_PANMI; 4-coumarate--CoA ligase-like 7
STRING	Si021673m	0.0	(Setaria italica)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Souza Cde A, et al. Genome-wide analysis of a land plant-specific acyl:coenzyme A synthetase (ACS) gene family in Arabidopsis, poplar, rice and Physcomitrella. New Phytol., 2008. 179(4): p. 987-1003 [PMID:18627494]