PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02383.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ARR-B

Protein Properties

Length: 241aa MW: 27670.5 Da PI: 4.9988

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02383.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	36.4	1.2e-11	192	218	25	51
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQ 51 e+A+Pk+ilelm+v+ Lt+e+v+SHLQ Zmw_sc02383.1.g00140.1.sm.mk 192 EEAVPKRILELMNVEKLTRENVASHLQ 218 78************************* PP
2	Response_reg	79.3	1.3e-26	15	123	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvta 79 vl vdD+p+ +++l+++l++ +y +v+++ ++ al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++ Zmw_sc02383.1.g00140.1.sm.mk 15 VLAVDDDPVCLKVLETLLRRCQY-HVTTTNQAITALKLLREHRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSV 93 799******************.************************************87754.558**** PP TTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 80 hgeeedalealkaGakdflsKpfdpeelvk 109 +ge + + + + Ga d+l Kp+ +eel++ Zmw_sc02383.1.g00140.1.sm.mk 94 NGETKSVMKGITHGACDYLIKPVRIEELRN 123 **************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	4.3E-42	12	136	No hit	No description
SuperFamily	SSF52172	4.7E-36	12	139	IPR011006	CheY-like superfamily
SMART	SM00448	7.4E-30	13	125	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	42.461	14	129	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	5.7E-24	15	124	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	6.60E-25	16	128	No hit	No description
TIGRFAMs	TIGR01557	4.7E-11	191	218	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.0E-9	192	218	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MEEKKRDQFP VGMRVLAVDD DPVCLKVLET LLRRCQYHVT TTNQAITALK LLREHRDMFD 60 LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSVNGETKSV MKGITHGACD YLIKPVRIEE 120 LRNIWQHVVR RKFSSREHSN LDIYKEPPTS DSCHGQSQSV SRASDQSGRL SKKRKEPHSE 180 EEDDSDENDF QEEAVPKRIL ELMNVEKLTR ENVASHLQEK DDISFAENEL GCDFFPLGAC 240 M

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250\|UniProtKB:Q940D0, ECO:0000269\|PubMed:22383541}.
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964668.1	1e-120	two-component response regulator ORR22
Swissprot	B8B3I4	1e-113	ORR22_ORYSI; Two-component response regulator ORR22
Swissprot	Q5SML5	1e-113	ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBL	A0A3L6S346	1e-121	A0A3L6S346_PANMI; Two-component response regulator
STRING	Pavir.Da02067.1.p	1e-120	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1856	38	94

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]