PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02412.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 526aa MW: 57781.3 Da PI: 9.4103

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02412.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.8	1.3e-50	259	384	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelv +yL+++++g+ ++ +i+e+d+y+++Pw+Lp+++ +++ewyfF++rd+ky++g+r+nra+ +g Zmw_sc02412.1.g00020.1.am.mk 259 LPPGFRFHPTDEELVLHYLCARAAGRGAPV-PIIAELDLYRFDPWELPARALFGRREWYFFTPRDRKYPNGSRPNRAAGTG 338 79***********************999.88***********87778999********************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg dk+v + +g++vg+kk Lvfy+g+ p+g+kt+W+mheyrl Zmw_sc02412.1.g00020.1.am.mk 339 YWKATGADKPVAH-RGRTVGVKKALVFYHGKPPRGVKTEWIMHEYRL 384 *********.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.07E-62	255	411	IPR003441	NAC domain
PROSITE profile	PS51005	59.369	259	411	IPR003441	NAC domain
Pfam	PF02365	6.3E-26	260	384	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MICSPLASAS RCDLDLGGHG CCPCARVAMA GGATIGEVVG EAVGEVVGSD GSLEEVTTRR 60 ERWQAGAVRC EKGGERGGAA LGGRGSATRR CRASIAPAGE RDVIPVRFKE PRAREIGLSP 120 SHPKFPIPTT VDAGRCGRFV DPTAAVVNHR RQRGVVSGKR PTSPPNHRAA AVAHQSQLAL 180 TPTRRSFVSL TVSVRLFIPL LSPPHSSPPT SLTDTVSSHR RNARPNPRHH RKEGNNRIYR 240 QEAMAGPARR RDAEAELNLP PGFRFHPTDE ELVLHYLCAR AAGRGAPVPI IAELDLYRFD 300 PWELPARALF GRREWYFFTP RDRKYPNGSR PNRAAGTGYW KATGADKPVA HRGRTVGVKK 360 ALVFYHGKPP RGVKTEWIMH EYRLADDAGR RKPGNGSLRL DDWVLCRLYN KKNEWEKLQQ 420 QQEEERKELE MDASHSQSFG DTRTPESGVD DVDVDQVPAF GDMGAVVPKK EVQEIGDLGG 480 ADDWLAGINL DDLQGLCPVP DDDFFSSLLV TPTAARAELG RHLLKF

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MICSPLASAS RCDLDLGGHG CCPCARVAMA GGATIGEVVG EAVGEVVGSD GSLEEVTTRR  60
ERWQAGAVRC EKGGERGGAA LGGRGSATRR CRASIAPAGE RDVIPVRFKE PRAREIGLSP  120
SHPKFPIPTT VDAGRCGRFV DPTAAVVNHR RQRGVVSGKR PTSPPNHRAA AVAHQSQLAL  180
TPTRRSFVSL TVSVRLFIPL LSPPHSSPPT SLTDTVSSHR RNARPNPRHH RKEGNNRIYR  240
QEAMAGPARR RDAEAELNLP PGFRFHPTDE ELVLHYLCAR AAGRGAPVPI IAELDLYRFD  300
PWELPARALF GRREWYFFTP RDRKYPNGSR PNRAAGTGYW KATGADKPVA HRGRTVGVKK  360
ALVFYHGKPP RGVKTEWIMH EYRLADDAGR RKPGNGSLRL DDWVLCRLYN KKNEWEKLQQ  420
QQEEERKELE MDASHSQSFG DTRTPESGVD DVDVDQVPAF GDMGAVVPKK EVQEIGDLGG  480
ADDWLAGINL DDLQGLCPVP DDDFFSSLLV TPTAARAELG RHLLKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-93	246	417	2	174	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269\|PubMed:18813954, ECO:0000269\|PubMed:20632034}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001141629.2	1e-142	uncharacterized protein LOC100273749
Swissprot	Q7EZT1	1e-116	NAC67_ORYSJ; NAC domain-containing protein 67
TrEMBL	A0A0A9P3S7	1e-147	A0A0A9P3S7_ARUDO; Uncharacterized protein
STRING	GRMZM2G079632_P01	1e-142	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4414	30	71

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Takasaki H, et al. The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol. Genet. Genomics, 2010. 284(3): p. 173-83 [PMID:20632034] Ghosh T,Rai M,Tyagi W,Challam C Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family. Plant Signal Behav, 2016. 11(5): p. e1138192 [PMID:26829663] Rahman H,Ramanathan V,Nallathambi J,Duraialagaraja S,Muthurajan R Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice. BMC Biotechnol., 2016. 16 Suppl 1: p. 35 [PMID:27213684]