PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02416.1.g00250.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 251aa MW: 26918.7 Da PI: 6.7896

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02416.1.g00250.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.2	1.3e-31	197	251	2	56
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeH 56 +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d vv++tYeg+H Zmw_sc02416.1.g00250.1.am.mk 197 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSFQDAAVVITTYEGKH 251 8*****************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-32	181	251	IPR003657	WRKY domain
SuperFamily	SSF118290	1.12E-26	188	251	IPR003657	WRKY domain
PROSITE profile	PS50811	29.218	191	251	IPR003657	WRKY domain
SMART	SM00774	7.7E-33	196	251	IPR003657	WRKY domain
Pfam	PF03106	1.8E-24	197	251	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MADARRVDHD GGHQRHLSGD FQFHDDLASL FAQRLEAGTP MQQQPWFTDY LQQASTLTPL 60 DFDSFAGEFD MSTAVEEVKR ELAVDGTGAA SGVGMPGGGG GTSTTAPLMQ NSMSLSSTSS 120 EACGAGGGAG AGEESPGKCK EEEGEGDESK DGSAAKGGGE MDGKNKKGAA KGKGKGEKRP 180 RQPRFAFMTK SEVDHLEDGY RWRKYGQKAV KNSPFPRSYY RCTTQKCPVK KRVERSFQDA 240 AVVITTYEGK H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-25	187	251	8	72	Probable WRKY transcription factor 4
2lex_A	5e-25	187	251	8	72	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807851.1	2e-90	uncharacterized protein LOC112886239
TrEMBL	A0A2S3H9K9	4e-89	A0A2S3H9K9_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EA94	4e-89	A0A2T7EA94_9POAL; Uncharacterized protein
STRING	Pavir.J10895.1.p	1e-111	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173