PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02436.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 271aa    MW: 30680.6 Da    PI: 8.4498
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02436.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-08108151344
                                   SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                                    WT+   +l+ +a + + ++   +W+ Iar +g g+++++++ ++
  Zmw_sc02436.1.g00080.1.am.mk 108 QWTPKQNKLFEQALAVYDKDtpdRWTNIARAVG-GKSAEEVRRYY 151
                                   7********************************.*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.592104159IPR017884SANT domain
SMARTSM007173.7E-8105157IPR001005SANT/Myb domain
PfamPF002498.4E-7107151IPR001005SANT/Myb domain
SuperFamilySSF466891.33E-11108163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-5108161IPR009057Homeodomain-like
CDDcd001673.25E-7109154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MLIATAQRWQ QRFHSPGQEI SQRKLACCNR MKCSSLGPIE PHVYAHHSAD GKACDESRLM  60
EGLVSPISPF PSHHQLTAAL YCFQLPLDSR SKHEMASLSM TKPSARAQWT PKQNKLFEQA  120
LAVYDKDTPD RWTNIARAVG GKSAEEVRRY YELLEEDVKH IESGKVPFPE YRGNAGAATG  180
YEADRYEYLI LYAPFEVEAY EDLTRRKEAV REDATLRARH IAQYEWYIPT ARAEPGHKAN  240
GEPKEAQTPR VPVLSGSPPP HSAPRRNKPP T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-2998176178RADIALIS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230