PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02438.1.g00150.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 602aa    MW: 65903.3 Da    PI: 9.6124
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02438.1.g00150.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-11129185155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Zmw_sc02438.1.g00150.1.am.mk 129 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 185
                                   57*******************5444.2455536655.779999**************98 PP
2AP231.73.8e-102783191155
                           AP2  11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Zmw_sc02438.1.g00150.1.am.mk 278 EHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 319
                                   37******988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-9129185IPR001471AP2/ERF domain
CDDcd000183.28E-17129195No hitNo description
SuperFamilySSF541714.58E-15129195IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-12130194IPR001471AP2/ERF domain
SMARTSM003802.5E-23130199IPR001471AP2/ERF domain
PROSITE profilePS5103217.477130193IPR001471AP2/ERF domain
PRINTSPR003678.6E-5131142IPR001471AP2/ERF domain
PRINTSPR003678.6E-5175195IPR001471AP2/ERF domain
PROSITE profilePS5103216.529267327IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-15275328IPR001471AP2/ERF domain
CDDcd000185.34E-18275329No hitNo description
SMARTSM003806.6E-24275333IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-14276329IPR016177DNA-binding domain
PfamPF008473.6E-5278319IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MDMDMSSTIY PHHWLSFSLS NNYHHGLLEA FSNSSAPQLG EEGAGVEETP KMEDFLGGVG  60
GTGAPHAAPA EDHQLGCGEL GSIAAGFCRQ YPASGMPENP GAVTIATGME VAESDQARRP  120
AETFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA  180
LKYWGPTTTT NFPVSNYEKE LEEMKSMTRQ EFIASLRRAV LAAAFFATYT PRRTRACGHS  240
VCWPVAMGSH VDLFVFLLFC QEEQRLLTRS LHLQRSHEHG RWQARIGRVA GNKDLYLGTF  300
STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVESIVNSD LPVGGGAAGR ASKFPGSNNS  360
GGVMWGAAAG AMGQHDSTGN KQSHGYVSNI PYAASVAMTA GYEGSTGNNG TWVTSATSTA  420
PQFYNYLFGM ETCCTNHHFQ LPPATSPPLH GGKAKGAPNL GRVLNCTAPN LSPTKRAAHA  480
DLVYFLFPPL PPRPLLLLPS PARRSASSHG ARRSPAVGFR RGLAFFSEST TSPADEVACG  540
PRLRRRPDPR LRARTRLLRL RFRLHFLLLR RVGREVAIGV VLAGLLQASW RGSKWWCRYA  600
TP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1543550RRRPDPRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965682.11e-175AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1E5V5G50.0A0A1E5V5G5_9POAL; AP2-like ethylene-responsive transcription factor AIL5
STRINGSi008325m1e-174(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151