PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02445.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 226aa    MW: 25466 Da    PI: 10.8323
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02445.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-2347130179
                                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                   f+kv tpsdv+k++rlv+pk+fae+h    g   + ++ l + d +g   W+++++y+++s++yv+tkGW+++v++++L +
  Zmw_sc02445.1.g00050.1.am.mk  47 FEKVVTPSDVGKLNRLVVPKHFAERHlpllGAAARAGTVLCFHDARGhAAWRFRYSYWGSSQSYVMTKGWSRYVRDKRLAA 127
                                   99****************************878889999*****999799******************************* PP

                                   T-E CS
                            B3  77 gDf 79 
                                   gD+
  Zmw_sc02445.1.g00050.1.am.mk 128 GDT 130
                                   **7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2943130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.27E-2345130IPR015300DNA-binding pseudobarrel domain
CDDcd100177.36E-2345130No hitNo description
PfamPF023621.3E-2047130IPR003340B3 DNA binding domain
PROSITE profilePS5086311.08247149IPR003340B3 DNA binding domain
SMARTSM010191.4E-1547144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MALTLAQESW KSSELGGGAG GLAAEGASSD QQLLQSHTGG GVRERLFEKV VTPSDVGKLN  60
RLVVPKHFAE RHLPLLGAAA RAGTVLCFHD ARGHAAWRFR YSYWGSSQSY VMTKGWSRYV  120
RDKRLAAGDT DARRGRRLRL FGVDLELRAE PLTRIGVQDI MIIDYVIIIE KREKQQGRRQ  180
RTVEDWKADD DQRWRARETR TSNTLQGGKK NGDSVKFLVR VLLLSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-3543129489B3 domain-containing transcription factor NGA1
5os9_B4e-3543129489B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9LS064e-36RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLA0A3L6RX052e-44A0A3L6RX05_PANMI; Uncharacterized protein
STRINGPavir.Db02478.1.p1e-48(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934