PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02464.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 285aa MW: 29744.4 Da PI: 10.27

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02464.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.9	1.4e-35	51	111	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ al+cprC++++tkfCyynny++ qPry+CkaC+ryWt+GG+ rn+PvGg++rk++k+s Zmw_sc02464.1.g00040.1.sm.mk 51 PDVALACPRCNAMETKFCYYNNYNMLQPRYLCKACKRYWTHGGSQRNIPVGGASRKQNKRS 111 567899**************************************************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-21	48	110	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-30	54	109	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.767	55	109	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	57	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MRNSRNSKTS AGASSAHGNN NQQEARDMRQ AGAARQQAAA NVGERRPRPQ PDVALACPRC 60 NAMETKFCYY NNYNMLQPRY LCKACKRYWT HGGSQRNIPV GGASRKQNKR SSASSSLPAA 120 AASSSSVINK ELQQQLLPAA PMIEAAADFS NVFPSFMPTG FEHHSNQLPF SPAPAPLPLP 180 TLLPPVPMLA PDAGTPSFLD MLRGGFLDYQ TNGFYAPATA SSGMEALPFG PGVQPGVAGV 240 LQGGVAAPTG GRVDATAAGQ GAAWPKPQVR GNQQGGAGAP GNGRA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980592.1	5e-47	dof zinc finger protein PBF
Swissprot	O24463	2e-42	PBF_MAIZE; Dof zinc finger protein PBF
STRING	Si026678m	5e-46	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22474	3	7

Publications ? help Back to Top
Lang Z, et al. Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication. J. Hered., 2014 Jul-Aug. 105(4): p. 576-582 [PMID:24683184] Zhang Z,Zheng X,Yang J,Messing J,Wu Y Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7 [PMID:27621432]