PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02474.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 438aa    MW: 47744.2 Da    PI: 6.7386
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02474.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.4e-09246288754
                                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   + E++RR+r+ +++  L  l+P++     +K + a++   A+eYI++L
  Zmw_sc02474.1.g00070.1.am.mk 246 KKEKQRRQRLSEKYTALMLLIPNR-----TKDDRATVISDAIEYIQEL 288
                                   57*********************9.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.722239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-5245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6246288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.42E-10248309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-7248288No hitNo description
Gene3DG3DSA:4.10.280.102.8E-8248310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAKPQPAFPN PARACTPRTG VAFGAPAEPP RGSNRVSPWP APYPNSRFPL LYIAPLSFSF  60
VLIVPTNQPI ASQQLFVVDL APLAAFSEEE LCMYHPHCEL LMGHDTLDLD AGHPQLTASS  120
VATIPTELSF QLFDSLDAAA AASQPTVDYF FGGADHQSTV QYEALAPAGS HHATNMLRDY  180
YVMGEQYLPR TRAGAALVFG APDDESAAYM AGAFQCSPLP RPAGSRKRSR AVSGGFHGGL  240
VNGVEKKEKQ RRQRLSEKYT ALMLLIPNRT KDDRATVISD AIEYIQELGR TVEELTLLVE  300
KKRRRREQQG DVVDAAPAAV VAGTEADSSE GEVVAPTPAA VQRQPIRSTY IQRKSKDTFV  360
DVRIVEEEVN VKLTKRRRDG CLAAASRALD ELRLDLVHLS GGKIGDCHIY MFNTKIHPGS  420
SVFASAVASR LIEVVDEY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300305KKRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815629.11e-167transcription factor TIP2-like
SwissprotQ5JNS01e-155TIP2_ORYSJ; Transcription factor TIP2
TrEMBLA0A1E5UWC61e-175A0A1E5UWC6_9POAL; Transcription factor TIP2
STRINGPavir.Eb01270.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796