PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02477.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 258aa MW: 27754.4 Da PI: 10.5814

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02477.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.5	2.5e-13	58	118	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC............TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas.........kapskKlsKaeiLekAveYIksL 54 r+h+e+Er+RR+riN +++Lr+llP as + + ++++Ka+ L ++v+++++L Zmw_sc02477.1.g00050.1.am.mk 58 RNHSEAERKRRQRINAHLATLRTLLPAASrvspcafgsARRWRRMDKAALLGEVVRHVREL 118 68***********************999***6666677************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.64E-12	52	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.843	55	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.00E-10	58	119	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.3E-13	58	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-11	58	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-9	61	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	1.3E-5	161	230	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MSAPGLAGYF TPRYEPASKR EARTVAGMVP SQSNEAEATL DGECSAPAPA TTRSGPSRNH 60 SEAERKRRQR INAHLATLRT LLPAASRVSP CAFGSARRWR RMDKAALLGE VVRHVRELRG 120 EADAAAAGAA VAVPGERDEV GVEEGHYCWY AGERAASRHV RAWLCCADRP GLMSELSRAV 180 RSVRARPVRA EIATVGGRTR SVLELNVGGQ HAAADGGSTS SRQTLQAAFR AVLLSREEGM 240 LAADCYKRQR MSAHLAKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	68	ERKRRQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957057.1	2e-93	transcription factor bHLH30
Refseq	XP_012699568.1	2e-93	transcription factor bHLH30
TrEMBL	A0A1E5W6B9	1e-96	A0A1E5W6B9_9POAL; Uncharacterized protein
STRING	Si033077m	6e-93	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4114	35	69