PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02506.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 681aa MW: 71940.9 Da PI: 9.5925

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02506.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.3	9.3e-37	446	546	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk +rrkC++dC+lapyfpa++p+++a+v+++FGasn+ ++l++lp +er +a++++++eA r++dPvyG++gvi Zmw_sc02506.1.g00050.1.am.mk 446 RCAACKNQRRKCSRDCILAPYFPASDPQRYACVQRVFGASNIARVLQSLPVHERGNAADTMAMEAYRRVQDPVYGCAGVIV 526 6****************************************************************************** PP DUF260 82 klqqqleqlkaelallkeel 101 +lq++++ +++ela++++++ Zmw_sc02506.1.g00050.1.am.mk 527 RLQEEIRAAQSELARTQAQI 546 *************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.630.10	1.6E-4	67	117	No hit	No description
SuperFamily	SSF52025	3.14E-42	113	298	No hit	No description
Gene3D	G3DSA:3.50.30.30	1.2E-36	146	298	No hit	No description
PROSITE profile	PS50891	24.066	445	546	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.4E-36	446	543	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MAHSSSHPGP LARLPSGSAR FLVAFGLLLL VSLLVVHRRP ALTGNSGGRH PDPAALFLSL 60 SAGANATIAA DLRALTAGPH LAGTSAAAGP ADYVLARFRA AGLQTLTREY QPLLSYPSRA 120 SLALLRRDGS LLGRLSVEEP ADVGRRLMQP YHAYAPSGEA VAEAVFVNLG REEDYLALER 180 LGVAVRGRIA LAVRGGGYRG GVVARAAERG AVAVLIAGHA DGGVERGTVL LSGPGDPLTP 240 GWAATPQAER FGFDHEAVKQ RFPKIPSMPI SFKTAVAIIQ TLHGQAIPAE WKTNLGVDEG 300 CVKDPDVMGK MVHDTWKEMD GSINLYSPPE DYESKLSFFP GIADIISRLG NVTTASFTSI 360 WSAAAAFSPL TISASCSRAG RMQTTDQAFA VDETLTPSRS PDHTPLAQRR HSKISPFPAW 420 NLAVAPSNHI MSMSANAEAS ATPSRRCAAC KNQRRKCSRD CILAPYFPAS DPQRYACVQR 480 VFGASNIARV LQSLPVHERG NAADTMAMEA YRRVQDPVYG CAGVIVRLQE EIRAAQSELA 540 RTQAQIATHQ LMNAQVPAPP PPPSPQQQAG DALTVQQEPF QGLDALLLDD ARPAGRACEV 600 GGVQAEKIRL PTLRGSAASS VGLAASRSPH SPIGTPTCGR GRLAAVRPVA SPAQGRRPAA 660 PHWFDLIPIG PGRGSQAGSH L

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MAHSSSHPGP LARLPSGSAR FLVAFGLLLL VSLLVVHRRP ALTGNSGGRH PDPAALFLSL  60
SAGANATIAA DLRALTAGPH LAGTSAAAGP ADYVLARFRA AGLQTLTREY QPLLSYPSRA  120
SLALLRRDGS LLGRLSVEEP ADVGRRLMQP YHAYAPSGEA VAEAVFVNLG REEDYLALER  180
LGVAVRGRIA LAVRGGGYRG GVVARAAERG AVAVLIAGHA DGGVERGTVL LSGPGDPLTP  240
GWAATPQAER FGFDHEAVKQ RFPKIPSMPI SFKTAVAIIQ TLHGQAIPAE WKTNLGVDEG  300
CVKDPDVMGK MVHDTWKEMD GSINLYSPPE DYESKLSFFP GIADIISRLG NVTTASFTSI  360
WSAAAAFSPL TISASCSRAG RMQTTDQAFA VDETLTPSRS PDHTPLAQRR HSKISPFPAW  420
NLAVAPSNHI MSMSANAEAS ATPSRRCAAC KNQRRKCSRD CILAPYFPAS DPQRYACVQR  480
VFGASNIARV LQSLPVHERG NAADTMAMEA YRRVQDPVYG CAGVIVRLQE EIRAAQSELA  540
RTQAQIATHQ LMNAQVPAPP PPPSPQQQAG DALTVQQEPF QGLDALLLDD ARPAGRACEV  600
GGVQAEKIRL PTLRGSAASS VGLAASRSPH SPIGTPTCGR GRLAAVRPVA SPAQGRRPAA  660
PHWFDLIPIG PGRGSQAGSH L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-28	447	541	12	113	LOB family transfactor Ramosa2.1
5ly0_B	6e-28	447	541	12	113	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8038	6	7