PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02509.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 327aa MW: 34915.8 Da PI: 10.3388

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02509.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.1e-12	186	232	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++i+++f eL ++P++ +K++ a+iL +A+ Y+k+Lq Zmw_sc02509.1.g00100.1.am.mk 186 EHIMAERKRREKIRQRFVELSAVIPSL-----TKMDNATILYRATSYVKELQ 232 599*********************9.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.526	182	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-15	185	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-16	186	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-10	186	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.15E-13	187	236	No hit	No description
SMART	SM00353	2.2E-12	188	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
METRETRVAA GTAREPMRGR GVKAREETEA SGAIGGTARR IKRKTTMEDM TEFMQWATNA 60 LQQEHSAPPV ADCASPSVLL GVPEEQRSIM GAPATNGWIP GGTTDGSLVG HIAVPAAPMV 120 APSTNMAGNA PTSSLVGGNT SASWSFGSAT GRVLSELAYR SQPTRTACLT NPWSSASFAP 180 PPYAREHIMA ERKRREKIRQ RFVELSAVIP SLTKMDNATI LYRATSYVKE LQERIKRREA 240 AGSALSGSMD NIVPTPRHAT PAGPTKPLPD VQAHFSGKSV MVRIQCENGK GVIVKVLKEV 300 EEAHLSIVDA NFMAAATRGV GRVLLGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	195	ERKRRE
2	191	196	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984147.3	5e-53	transcription factor bHLH18-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP33283	3	4