PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02525.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 253aa MW: 28133.4 Da PI: 7.5407

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02525.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.4e-10	12	61	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRd++N+ f+eL l ++ ++++Ka+iL +++ +k+L Zmw_sc02525.1.g00140.1.sm.mkhc 12 RKVQKADREKMRRDKLNEQFQELGNALDPD----RPRNDKATILGDTIQMLKDL 61 5677889******************997....799*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.1E-13	10	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-14	10	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.817	11	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.5E-8	12	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.49E-7	12	65	No hit	No description
SMART	SM00353	1.2E-7	17	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MECQAQGSTA ARKVQKADRE KMRRDKLNEQ FQELGNALDP DRPRNDKATI LGDTIQMLKD 60 LTSQVNKLKA EYTSLSEEAR ELTQEKNELR DEKASLKSDV DNLNNQYQQR MRVMYPWAGM 120 EPSVVIGPPA PYPYPVPVHI PSGAVPMHPQ MQAYPFFRSQ TSGTIPSPYM AYTQPCHPPT 180 YQPSNQLNTQ VPHSSSHRSN SPAQDCRSKS STLQQESCGG KNSDVGDVAS DLELKTPGSS 240 APSHSDIAKG LRF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002458163.1	1e-151	transcription factor bHLH121 isoform X2
Swissprot	Q9LT23	8e-74	BH121_ARATH; Transcription factor bHLH121
TrEMBL	C5XR28	1e-149	C5XR28_SORBI; Uncharacterized protein
STRING	Sb03g028030.1	1e-150	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11767	25	29

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]