PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02531.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 212aa    MW: 22540.3 Da    PI: 7.6795
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02531.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.6e-052245326
                                  HHHHHHHHHHHHHHHHHHHHHHCT CS
                           HLH  3 rahnerErrRRdriNsafeeLrel 26
                                  r+h e+E+rRR+ri+s +++Lr +
  Zmw_sc02531.1.g00010.1.am.mk 22 RNHREAEKRRRERIKSHLDRLRNI 45
                                  78********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.19E-82271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-42267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
SEEDEAAAAA AAAHDRALAA SRNHREAEKR RRERIKSHLD RLRNIDKASL LAKAVERVRD  60
LKQRVAGVSD AAPAHLFPTE HDEIVVLASG GAVFEASVCC DDRSDLLPEL IETLRGLRLR  120
TLRAEMATLG GRVRNVLVLA RDTTGADIHG GGVIAEDDGG YGRADLAGSI DGNGGDFLKE  180
ALRALVERPG AGGAGDRPKR RRVSGTNMQA AA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198202KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981312.12e-87transcription factor bHLH106-like
SwissprotO806747e-42BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A368SD614e-86A0A368SD61_SETIT; Uncharacterized protein
STRINGSb01g003830.11e-79(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]