PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02531.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 260aa    MW: 28026 Da    PI: 11.1922
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02531.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-1982130355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++GVr+++ +grW+AeIrdp +   r+r +lg+f taeeAa+a++ a  +l+g
  Zmw_sc02531.1.g00180.1.sm.mk  82 FRGVRQRP-WGRWAAEIRDPHN---RRRLWLGTFNTAEEAAAAYDTANIRLRG 130
                                   8*******.**********732...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-1381130IPR001471AP2/ERF domain
CDDcd000184.72E-3081138No hitNo description
PROSITE profilePS5103223.86881138IPR001471AP2/ERF domain
SMARTSM003807.6E-3581144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3081139IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-2282139IPR016177DNA-binding domain
PRINTSPR003671.6E-108293IPR001471AP2/ERF domain
PRINTSPR003671.6E-10104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGTNPSLQEL AAVAAKAAAT ASEPRRARVV RILVHDADAT DSSSSEDEAP RQLRRVRGGG  60
SSSAGVKRRV IEAPGARPAM RFRGVRQRPW GRWAAEIRDP HNRRRLWLGT FNTAEEAAAA  120
YDTANIRLRG ASATTNFPST RYSPPPEPAK PIISLTPAPG KLITLPPIPV IPTAPLQVKK  180
EVGSCDDQEE VGSISQVQAL DQRQMPLWGM IAGKRKKRSG CGSGRGVRAI HAASVCVDEL  240
CGKPTQKRLP LVRSTFAAYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1982138663ATERF1
3gcc_A6e-1982138663ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981291.11e-104ethylene-responsive transcription factor CRF1
TrEMBLA0A0A9AUG21e-106A0A0A9AUG2_ARUDO; Uncharacterized protein
STRINGSi037209m1e-103(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835