PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02540.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 380aa    MW: 38664.8 Da    PI: 5.5028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02540.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.8e-20147196255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Zmw_sc02540.1.g00110.1.sm.mkhc 147 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 196
                                     7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.646147204IPR001471AP2/ERF domain
SMARTSM003803.4E-35147210IPR001471AP2/ERF domain
PfamPF008471.2E-13147196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-32147205IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-22147205IPR016177DNA-binding domain
PRINTSPR003671.3E-11148159IPR001471AP2/ERF domain
CDDcd000181.13E-13155206No hitNo description
PRINTSPR003671.3E-11170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MCFELADPRG SGGAGWPVAK GGGQEQDEGA ASEGMVAGAA GLMSDHYQAQ EMSTMVSALT  60
NVVAGGLHPW GAGASTESGR EEQAMRGGGY VHEMGMYPGA PSPEFAASVQ SSDTQSAGAS  120
AAAGMEEHHH LASAAANAED PDTPRRRYRG VRQRPWGKWA AEIRDPHKAA RVWLGTFETA  180
EAAARAYDEA ALRFRGNRAK LNFPEDARLY PASSAATATP AHPAPAVAAS STSQAVYAGA  240
AQDSSDYLRY QMLLQGTTGN QGTSLLPFYG GGSGMASSYG GGSVMSNPYA GGGAVSTSYG  300
GGGGGGGGGH TSGFSGSSYS FPTSCVTVAT VPSSASSASG HYYSSSHDAQ HQGDAAADWN  360
WESALAYPAT RASWSDSSSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-23148204663ATERF1
3gcc_A9e-23148204663ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674780.35e-93ethylene-responsive transcription factor ERF115
TrEMBLA0A1E5WKI71e-99A0A1E5WKI7_9POAL; Uncharacterized protein
STRINGOMERI01G34960.13e-93(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649