PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02556.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 233aa MW: 25639.3 Da PI: 9.887

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02556.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32	2.3e-10	161	223	31	99
.--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 e++ +tl de+ ++++ ++ ++++ l++GW +F+ ++g+++gD vF+l++ ++f +v+++r+ Zmw_sc02556.1.g00090.1.am.mk 161 EKDSIVTLVDENDQEFDTNY--LAYKKG--LSGGWAGFALSHGIRDGDATVFQLIKPTTF--KVHIVRA 223 233469************..555555..9*********************987777..8888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	0.0041	135	224	IPR003340	B3 DNA binding domain
CDD	cd10017	4.54E-13	139	222	No hit	No description
SuperFamily	SSF101936	6.87E-12	161	223	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.5E-7	161	223	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.7E-10	161	223	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.305	166	224	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MREGNERSNV ISSSFIEEAI PSGTQARLPP MLSQDLGRQC VPLAGLFGLK FPPPLTRPIL 60 IRFSRAPFPG NPPGPEREMA AVAKQGISAY EAAREKTVQE NKRKIEALNL HHLSAAINMA 120 PKTPSPMKQK RRRIIEAAVV TPSPARRSRR LANLPEVKYA EKDSIVTLVD ENDQEFDTNY 180 LAYKKGLSGG WAGFALSHGI RDGDATVFQL IKPTTFKVHI VRAASDDDDE AAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	133	KRRRI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797698.1	6e-41	B3 domain-containing protein Os03g0184500-like
Swissprot	Q10QS9	7e-38	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	A0A317Y1P1	1e-44	A0A317Y1P1_MAIZE; B3 domain-containing protein
STRING	OPUNC03G06010.1	1e-36	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]